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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatgatcaagtgacacattgttttgttaaaagagaagactttttcagtaggctctgaaccaaagatatgtcttcttttcttacttggcctacttgatgcgatctcagGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAAACTGTCACAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G48470.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080901|gb|DR376658.1|DR376658
EST:     AATCCGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAAAGGAAGG                         GGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTA
genomic: AAGACGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAATGGAAGGgtaagtatga ... gcgatctcagGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTA
EST: gi|86082449|gb|DR378208.1|DR378208
EST:     AATCCGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAAAGGAAGG                         GGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTA
genomic: AAGACGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAATGGAAGGgtaagtatga ... gcgatctcagGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTA
EST: gi|86078170|gb|DR373927.1|DR373927
EST:     AATCCGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAAAGGAAGG                         GGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTA
genomic: AAGACGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAATGGAAGGgtaagtatga ... gcgatctcagGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaaccaaagatatgtcttcttttcttacttggcctacttgatgcgatctcagGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAAACTGTCACAAAG
        aaagatat  TA-rich tract