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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatctgtcttgcaatcaatcttcttgctaagtaatgtcaaccttttgatgatggtggtcttctttgatgattgtttgcctagACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGTACCCATAGGTATTGGGAAAAACTCGCACATCAAAAGGGCCATCATCGACAAAAACGCAC

Basic information

species Arabidopsis thaliana
transcript AT5G48300.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125235853|gb|EL249938.1|EL249938
EST:     AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAG                         ACTGCTACGGAAAAGAG
genomic: AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAGgtaaaaatct ... gtttgcctagACTGCTACGGAAAAGAG
EST: gi|86075039|gb|DR370796.1|DR370796
EST:     AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGACTATTACGAG                         ACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGTACCCATAGGT
genomic: AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAGgtaaaaatct ... gtttgcctagACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGTACCCATAGGT
EST: gi|125297474|gb|EL311559.1|EL311559
EST:     AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAG                         ACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTG
genomic: AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAGgtaaaaatct ... gtttgcctagACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTG
EST: gi|86084119|gb|DR379878.1|DR379878
EST:     AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGACTATTACGAG                         ACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGTACCCATAGGT
genomic: AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAGgtaaaaatct ... gtttgcctagACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGTACCCATAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagtaatgtcaaccttttgatgatggtggtcttctttgatgattgtttgcctagACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGTACCCATAGGTATTGGGAAAAACTCGCACATCAAAAGGGCCATCATCGACAAAAACGCAC
                                              tttgcct  CT-rich tract
               ttttgat  TA-rich tract