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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagataatggtttcttccttctacaacaacttagttacatattctgtcgcggtcataatatcgaaactgtttagaatctgaagGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATGCAGTTGGAATGCTTGACCGTATGTTTCTAGGAATCCAGCATTTGTACAGAAAACCTG

Basic information

species Arabidopsis thaliana
transcript AT5G47900.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116435422|gb|EG478014.1|EG478014
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         GTGAAATGTGGGGTACGAGGTC
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaagGTGAAATGTGGGGTACGAGGTC
EST: gi|116435431|gb|EG478023.1|EG478023
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435431|gb|EG478023.1|EG478023
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435431|gb|EG478023.1|EG478023
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435431|gb|EG478023.1|EG478023
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435431|gb|EG478023.1|EG478023
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435431|gb|EG478023.1|EG478023
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435441|gb|EG478033.1|EG478033
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         GTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATGCAGTTGGA
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaagGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATGCAGTTGGA
EST: gi|116464699|gb|EG507291.1|EG507291
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         GTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATGCAGTTGGA
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaagGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATGCAGTTGGA
EST: gi|116435430|gb|EG478022.1|EG478022
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435430|gb|EG478022.1|EG478022
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435430|gb|EG478022.1|EG478022
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435430|gb|EG478022.1|EG478022
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435430|gb|EG478022.1|EG478022
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435430|gb|EG478022.1|EG478022
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435429|gb|EG478021.1|EG478021
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435429|gb|EG478021.1|EG478021
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435429|gb|EG478021.1|EG478021
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435429|gb|EG478021.1|EG478021
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435429|gb|EG478021.1|EG478021
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435429|gb|EG478021.1|EG478021
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435479|gb|EG478071.1|EG478071
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435479|gb|EG478071.1|EG478071
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435479|gb|EG478071.1|EG478071
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435479|gb|EG478071.1|EG478071
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435479|gb|EG478071.1|EG478071
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435479|gb|EG478071.1|EG478071
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435426|gb|EG478018.1|EG478018
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435426|gb|EG478018.1|EG478018
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435426|gb|EG478018.1|EG478018
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435426|gb|EG478018.1|EG478018
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435426|gb|EG478018.1|EG478018
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-
EST: gi|116435426|gb|EG478018.1|EG478018
EST:     AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG                         A
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... gaatctgaag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttagttacatattctgtcgcggtcataatatcgaaactgtttagaatctgaagGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATGCAGTTGGAATGCTTGACCGTATGTTTCTAGGAATCCAGCATTTGTACAGAAAACCTG
      ttacatatt  TA-rich tract