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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcaactgtgggcattgtctaaattttagatacggtttcttctgatggttgattagatgaaaggcagtattctgacctgatgcaatggttttcaacttgcagCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCT

Basic information

species Arabidopsis thaliana
transcript AT5G47770.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G47770.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv19s0015g01010.t01 (Vitis vinifera), 3'ss of exon 6
----gtgag---tcaact-gtgggcattgtctaaattttagatacggtttcttctgatggttgattagatgaaaggcagtattctgacc-tgatgcaatggttttcaacttgcagCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCT
    |||||   |||| | |||    |||| | | |||||  |||  |   || ||||      ||   |    |    | || | |   | | |   | || ||   | ||||| ||||| || ||||| ||||||||||| ||||||||||||||||| || || 
gtaagtgagaattcaaatagtgattcttgtttta-ttttacttacaatcaattttgattccatttttttttcttgtgtttcttttaattatcaagtggttgtgtttc-catgcagTCACCGCCGCATTGTTCAGTACAAAACTGCTTATTACTCATTTTACCTTCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124940909|gb|EL017315.1|EL017315
EST:     CCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAAT                         CCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTC
genomic: CCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAATgtgagtcaac ... caacttgcagCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTC
EST: gi|124765426|gb|EH855556.1|EH855556
EST:     AAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAAT                         CCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCC
genomic: AAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAATgtgagtcaac ... caacttgcagCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCC
EST: gi|124767568|gb|EH857698.1|EH857698
EST:     CCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAAT                         CCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCC
genomic: CCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAATgtgagtcaac ... caacttgcagCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCC
EST: gi|125168167|gb|EL192997.1|EL192997
EST:     TCACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAAAT                         CCACCGTCGTATTGTCCAGTACAAAACGGCTT
genomic: TCACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAA-Tgtgagtcaac ... caacttgcagCCACCGTCGTATTGTCCAGTACAAAACGGCTT
EST: gi|124909961|gb|EH984041.1|EH984041
EST:     ATCACCACCTTTGAAGGAGAAAAGGATT-GGCCAAGTACTCATTGTCAAT                         CCACCGTCGTATTG
genomic: ATCACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAATgtgagtcaac ... caacttgcagCCACCGTCGTATTG
EST: gi|125004068|gb|EL076337.1|EL076337
EST:     CACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTAAGTCAAT                         CCACCGTCGTATTGTCCAGTACAA
genomic: CACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATT--GTCAATgtgagtcaac ... caacttgcagCCACCGTCGTATTGTCCAGTACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgattagatgaaaggcagtattctgacctgatgcaatggttttcaacttgcagCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCT
                                         ttttc  CT-rich tract
                                         ttttcaa  TA-rich tract