1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaagttctgaagtagaatcaaattcttcagcttttcttaactctgcttataaggtttttttatttgactttgtttattattgggcacagGCGCAGCAAGATATGTCATCTATTGCTAACTTAGCTGAGGAAACAAAGAATAAGCTGGGAACATTTGCCTCTAGTATATTCAGTGATCTTCAGGATAGAA
species | Arabidopsis thaliana |
transcript | AT5G46750.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAG GCGCAGCAAGATATGTCATCEST: gi|86076412|gb|DR372169.1|DR372169
genomic: CCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAGgtaaagttct ... ttgggcacagGCGCAGCAAGATATGTCATC
EST: CCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAG GCGCAGCAAGATATGTCATCTATTGCTAACTTAGCTGAAGAAACAAAGAATEST: gi|164237390|gb|EL985678.1|EL985678
genomic: CCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAGgtaaagttct ... ttgggcacagGCGCAGCAAGATATGTCATCTATTGCTAACTTAGCTGAGGAAACAAAGAAT
EST: AGCGATCTCATCAACCGAATTTCTTTCCAG GCGCAGCAAGATATGTCATCTATTGCTAACTTAGCTGAGGAA-CAAAGAEST: gi|124939638|gb|EL016163.1|EL016163
genomic: AGCGATCTCATCAACCGAATTTCTTTCCAGgtaaagttct ... ttgggcacagGCGCAGCAAGATATGTCATCTATTGCTAACTTAGCTGAGGAAACAAAGA
EST: CTGCAAGCGATCTCATCAACCGAATTTCTTTCCAG GCGCAGCAAGATATGTCATCTATTGCTAAACTTAGCTGAGGAAACAAAGAA
genomic: CTGCAAGCGATCTCATCAACCGAATTTCTTTCCAGgtaaagttct ... ttgggcacagGCGCAGCAAGATATGTCATCTATTGCTAA-CTTAGCTGAGGAAACAAAGAA
tcttaactctgcttataaggtttttttatttgactttgtttattattgggcacagGCGCAGCAAGATATGTCATCTATTGCTAACTTAGCTGAGGAAACAAAGAATAAGCTGGGAACATTTGCCTCTAGTATATTCAGTGATCTTCAGGATAGAA
ttataaggttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagttctgaagtagaatcaaattcttcagcttttcttaactctgcttataaggtttttttatttgactttgtttattattgggcacagGCGCAGCAAGATATGTCATCTATTGCTAACTTAGCTGAGGAAACAAAGAATAAGCTGGGAACATTTGCCTCTAGTATATTCAGTGATCTTCAGGATAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG