Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctatgtctttcacctgctttttctgtgaacgcaagctcataagacttggtttcctatgacagAATTACAACCGCGACCTTTTCCTTTTTCTCTACGTTCTTCTCATCATAGTATCAGCCATGACATCTCTCAGAAAACACAATGACAAGTCACCCATATCTG

Basic information

species Arabidopsis thaliana
transcript AT5G46340.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116424668|gb|EG467260.1|EG467260
EST:     TATATTTCTATATCTGTGACCGCACAGAATTGCTTGGAGATTCTACCAAG                         AATTACAACCGCGACCTTTTCCTTTTTCTCTACGTTCTTCTCATCATAGTA
genomic: TATATTTCTATATCTGTGACCGCACAGAATTGCTTGGAGATTCTACCAAGgtacctatgt ... cctatgacagAATTACAACCGCGACCTTTTCCTTTTTCTCTACGTTCTTCTCATCATAGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacctgctttttctgtgaacgcaagctcataagacttggtttcctatgacagAATTACAACCGCGACCTTTTCCTTTTTCTCTACGTTCTTCTCATCATAGTATCAGCCATGACATCTCTCAGAAAACACAATGACAAGTCACCCATATCTG
                                          tttcctat  CT-rich tract
          tttttct  TA-rich tract