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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcctgatatgcttacatatggaactggaacgttatgttcaaccaataggtttgataacttggtcattactcattattgcttttgtagGTCATGCTGCGATTGTTTAGCCCTCGTAAAACAACTCTTCTTTTTGTCATACGTGATAAAACAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G45160.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G45160.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G390374_T01 (Zea mays), 3'ss of exon 5
-----gtatcctgatatg-cttacatatggaactggaacgt-tatgttcaaccaataggtttgataacttggt------cattactc--attattgcttttgtagGTCATGCTGCGATTGTTTAGCCCTCGTAAAACAACTCTTCTTTTTGTCATACGTGATAAAACAAAG
     |       || || ||| ||     | ||    |   |||| |  ||  ||||   |||| |  || |       |  |||   |    ||  | ||||||||||| |||| |||||||| ||||| || ||||| || || ||||| |||||||||||||| | |
gtaccgaggttaaatctgtctttcagggataccttatgcacatatgatatacatatagtcctgatcatctgatgtatagtaacacttggacatctgagtatgtagGTCATGATGCGTTTGTTTAGTCCTCGGAAGACAACACTACTATTTGTTATACGTGATAAAACCAGG

upper sequence: AT5G45160.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv10s0116g00810.t01 (Vitis vinifera), 3'ss of exon 4
gtatcctgatatgcttacatatggaactggaacgttatgttcaaccaataggtttgataacttggtcattactcattattgcttttgtagGTCATGCTGCGATTGTTTAGCCCTCGTAAAACAACTCTTCTTTTTGTCATACGTGATAAAACAAAG
|||  |   ||| | ||  | || | || | ||  ||| | ||   || |  ||  ||||  ||       | | || |  ||| | ||||||||| |||| || |||||||| || ||||| || || || ||||| ||||||||||||||||||
gtactccc-tatccatatttttgtatctagtacaatat-tgca--taacaaattcaataagatgagt----cccgtt-tctcttctatagGTCATGATGCGCTTATTTAGCCCACGCAAAACGACACTACTGTTTGTTATACGTGATAAAACAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttcaaccaataggtttgataacttggtcattactcattattgcttttgtagGTCATGCTGCGATTGTTTAGCCCTCGTAAAACAACTCTTCTTTTTGTCATACGTGATAAAACAAAG
                   tgataac  putative branch site (score: 2)
                                           ttgctttt  putative PPT
                 tttgataa  TA-rich tract