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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttgatttgcttctttaccagtcaacgatattattccagatcaattgccacttacaggcctcatgatatttttatggagttcttgcaactaaatgcagatatgtttactgaaaactgcagCAAAAGACACGCATTGAAAGAGTCATTGGATTTGTCCTAGCCATTTGGGGAATATTGTTTTACTCTCGGCTATTAAGCACAATGACAGAACAATTTCGG

Basic information

species Arabidopsis thaliana
transcript AT5G43745.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43745.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 3'ss of exon 6
gtcttgatttgcttctttaccagtcaacgatattattccagatcaattgccacttacaggcctcatgatatttttatggagttcttgcaactaaatgcagatatgtttactgaaaactgcagCAAAAGACACGCATTGAAAGAGTCATTGGATTTGTCCTAGCCATTTGGGGAATATTGTTTTACTCTCGGCTATTAAGCACAATGACAGAACAATTTCGG
                                                      || ||   |  |||  | ||||      | ||   | | ||   |  ||| ||   || || ||||||||||  ||||  |||| | | || ||||| ||||| || || || ||||| |||||||||||||| || ||||| || |||||||||||||||||  | 
---------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctaaagtaatagtgaattgtttac-----tgttttgattgaaaatat-tatattgtgtggaa-ctgcagCAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttttatggagttcttgcaactaaatgcagatatgtttactgaaaactgcagCAAAAGACACGCATTGAAAGAGTCATTGGATTTGTCCTAGCCATTTGGGGAATATTGTTTTACTCTCGGCTATTAAGCACAATGACAGAACAATTTCGG
                     aactaaa  putative branch site (score: 2)
                                 atatgttta  TA-rich tract