Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattagctgcaacgcattcccgaacattagaaatcgaaaatctaccgtactttgttaatcttgtctagcaaattccagGACGGAAAAGCATTGCCGGATGGGCCTGTTGTTATCTCTCCTGATGGTCTCTTTCCTTCGTTGTTTCGGGAAG

Basic information

species Arabidopsis thaliana
transcript AT5G42870.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42870.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G154366_T01 (Zea mays), 3'ss of exon 6
----------------------gtaattagctgcaacgcattcccgaacattagaaatcgaaa---atctaccgtactttgttaatcttgtctagcaaattccagGACGGAAAAGCATTGCCGGATGGGCCTGTTGTTATCTCTCCTGATGGTCTCTTTCCTTCGTTGTTTCGGGAAG
                        |   |||| || |  |   |  |  | ||||   ||      ||||| | ||     | |      | | |   ||| |||||||| |||||| | || ||||| ||||||||||| ||||| ||||||||||| || ||  | |   | ||||
tggtcatgacacacattcacaaagacccagctacagcaaaa--ctaataaatagagcccggtgcccatctatcttatcccctcatgtaaatttcg---atttcagGACGGCAAAGCACTTCCTGATGGCCCTGTTGTTATATCTCCAGATGGTCTCTTCCCGTCACTTTACAGAGAAG

upper sequence: AT5G42870.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA17G36130.1 (Glycine max), 3'ss of exon 7
---------------------gtaattagctgcaacgcatt---cccgaacattagaaatcgaaaatctaccgtactttgttaatcttgtctagcaaattccagGACGGAAAAGCATTGCCGGATGGGCCTGTTGTTATCTCTCCTGATGGTCTCTTTCCTTCGTTGTTTCGGGAAG
                        ||||  ||  | | | |   |  ||  |  | |||  ||||         |   | ||| || | | |   |   | ||||| || |||   || || ||||| ||||||||||| || |||||||| |||||||||||  | | ||| ||||
gtgataaataagtttcaaatcaatattaattgttatggactaaacaagacgaaaaaaaaaagaaagcagtttacatcctcttattcct-tttgttatgatgcagGATGGGAAACTTTTACCAGATGGCCCTGTTGTTATATCCCCTGATGGACTCTTTCCTTCTCTATATCGAGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattagaaatcgaaaatctaccgtactttgttaatcttgtctagcaaattccagGACGGAAAAGCATTGCCGGATGGGCCTGTTGTTATCTCTCCTGATGGTCTCTTTCCTTCGTTGTTTCGGGAAG
                             tgttaat  putative branch site (score: 3)
                           tttgttaat  TA-rich tract