Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacacatatgaaaacttttgagttgtgaattgtggcgttgggaagtatactgagatttattcttttggaatctttagGACCTATAAGTTGCCAATGTTATGCATTTTACCATTCCCAAAGCGAAACGATCCTTCGAACACCCAAGAGTTTCCACCGGGTAAACACGTCTTAGCTGTA

Basic information

species Arabidopsis thaliana
transcript AT5G40550.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164195652|gb|ES099415.1|ES099415
EST:     GAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGGAAGCGGTCAGAG                         GACCTATAAGTTGCCAATGTCATGCATTTTACCATT
genomic: GAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGGAAGCGGTCAGAGgtaaaacaca ... gaatctttagGACCTATAAGTTGCCAATGTTATGCATTTTACCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgaattgtggcgttgggaagtatactgagatttattcttttggaatctttagGACCTATAAGTTGCCAATGTTATGCATTTTACCATTCCCAAAGCGAAACGATCCTTCGAACACCCAAGAGTTTCCACCGGGTAAACACGTCTTAGCTGTA
                                                tcttt  CT-rich tract
                              agatttattctttt  TA-rich tract