1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttatgttgttgttttcggtatgttggtttgtttaaccataaccatagaaggttgtaattggtggaggataataagctcatgttgttgtgtgtttgaacagAGTGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGGATCTGAGTTACCAGATGATGGCGTAGATCTAACGGTCGACGACATTCCTTCTGCAG
species | Arabidopsis thaliana |
transcript | AT5G30510.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGCAAGCAGAAGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAG AGTGGACTGACGCTGAGEST: gi|125090188|gb|EL148276.1|EL148276
genomic: CGCAAGCAGAAGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAGgtatcattct ... gtttgaacagAGTGGACTGACGCTGAG
EST: AGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAG AGTGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGGATEST: gi|124946808|gb|EL022695.1|EL022695
genomic: AGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAGgtatcattct ... gtttgaacagAGTGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGGAT
EST: CGCAAGCAGAAGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAG AGTGGACCGACGCTGAGTTCTGACGGGATACTAGGEST: gi|124791966|gb|EH881645.1|EH881645
genomic: CGCAAGCAGAAGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAGgtatcattct ... gtttgaacagAGTGGACTGACGCTGAGTTCTGACGGGATACTAGG
EST: TCCAACCTGAG CGTGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGGATCTGAGEST: gi|124710165|gb|EH801567.1|EH801567
genomic: TCCAACCTGAGgtatcattct ... gtttgaacagAGTGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGGATCTGAG
EST: ATGCTTCGCTTCCAACCTGAG AGTGGACTGACGCTGAGTTCTGACGGGATACTAGGAEST: gi|125201908|gb|EL216862.1|EL216862
genomic: ATGCTTCGCTTCCAACCTGAGgtatcattct ... gtttgaacagAGTGGACTGACGCTGAGTTCTGACGGGATACTAGGA
EST: CGCAAGCAGAAGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAG AGTGGACTGACGCTGAGTTCTGACGGGATACTAGGEST: gi|86074980|gb|DR370737.1|DR370737
genomic: CGCAAGCAGAAGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAGgtatcattct ... gtttgaacagAGTGGACTGACGCTGAGTTCTGACGGGATACTAGG
EST: CGCAAGCAGAAGCCATGGCTCGTGCAGACATG-TTCGCTTCCAACCTGAG AGTGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGGATCTGAGEST: gi|124881097|gb|EH959999.1|EH959999
genomic: CGCAAGCAGAAGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAGgtatcattct ... gtttgaacagAGTGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGGATCTGAG
EST: CGCAAGCAGAAGCCATGGCTCATGCAGACATGCTTCGCTTCCAACCTGAG AGTGGACTGACGCTGAGTTCTGACGEST: gi|124816013|gb|EH900879.1|EH900879
genomic: CGCAAGCAGAAGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAGgtatcattct ... gtttgaacagAGTGGACTGACGCTGAGTTCTGACG
EST: CGCAAGCAGAAGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAG AGTGGACTGACGCTGTAGTTCTGEST: gi|164131938|gb|ES198079.1|ES198079
genomic: CGCAAGCAGAAGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAGgtatcattct ... gtttgaacagAGTGGACTGACGCTG-AGTTCTG
EST: CGCAAGCAGAAGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAG AGTGGACTGACGCTGAGTTCTGACGG
genomic: CGCAAGCAGAAGCCATGGCTCGTGCAGACATGCTTCGCTTCCAACCTGAGgtatcattct ... gtttgaacagAGTGGACTGACGCTGAGTTCTGACGG
agaaggttgtaattggtggaggataataagctcatgttgttgtgtgtttgaacagAGTGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGGATCTGAGTTACCAGATGATGGCGTAGATCTAACGGTCGACGACATTCCTTCTGCAG
ataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgttgttgttttcggtatgttggtttgtttaaccataaccatagaaggttgtaattggtggaggataataagctcatgttgttgtgtgtttgaacagAGTGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGGATCTGAGTTACCAGATGATGGCGTAGATCTAACGGTCGACGACATTCCTTCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - ggtttgt
- - - - - - - - - - - - - - - - -aaccata