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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgagtatcatcatatccgttatccccttttgctcattcatcgtatcacttttgaaataaatttcttatatatgttttcttggtccagGTTTCTTATATTAGCCAAAATTGGCCTGTTCAACACGTGGCAGCTAGCGAGGATGGGAAATACTTGGCGTTTGCTGGTTTACATGGCCTGATTTTGTATG

Basic information

species Arabidopsis thaliana
transcript AT5G28350.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G28350.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA18G47050.1 (Glycine max), 3'ss of exon 6
gttgagtatcatcatatccgttatc-cccttttgctcattcatcgtatcacttttgaaataaatttcttatatatgttttc--ttggtccagGTTTCTTATATTAGCCAAAATTGGCCTGTTCAACACGTGGCAGCTAGCGAGGATGGGAAATACTTGGCGTTTGCTGGTTTACATGGCCTGATTTTGTATG
           | || |   | ||  ||   |||   |  || |   || |  |  |   | ||  ||| || |  ||     || || |||||||||||||||  |||||| |||||||||||||| |||||||||||| ||||||| |  ||||| ||  |||||||| | |||||  |||| |||||||
----------gttatgtgtttgattgccaaattgtgaacacagcaattcccactgaatggatatcccttctaaagtttaaaagtttgtgcagGTTTCTTATATTTCCCAAAACTGGCCTGTTCAACATGTGGCAGCTAGCCAGGATGGCATGTACTTAGCTGTTGCTGGTCTTCATGGTTTGATATTGTATG

upper sequence: AT5G28350.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA09G39270.1 (Glycine max), 3'ss of exon 6
gttgagtatcatcatatccgttatccccttttgctcattcatcgtatcacttttgaaataaatttcttatatatgttttcttggtccagGTTTCTTATATTAGCCAAAATTGGCCTGTTCAACACGTGGCAGCTAGCGAGGATGGGAAATACTTGGCGTTTGCTGGTTTACATGGCCTGATTTTGTATG
        | | | | |  | | |  |   |||  || | ||  | |||||      |||    |  || |  |      || ||  ||||||||||||||  |||||| |||||||||||||| |||||||||||| ||||||| |  ||||| ||  |||||||| | || ||  |||| |||||||
-------gtta-cgtgtttgat-tgtcaaattgaacagtaat--tttcactgaatggatatcccttctaaagtttaaaagtttgtgtagGTTTCTTATATTTCCCAAAACTGGCCTGTTCAACATGTGGCAGCTAGCCAGGATGGAATGTACTTAGCAGTTGCTGGTCTTCACGGTTTGATATTGTATG

upper sequence: AT5G28350.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 6
gttgagtatcatcatatccgttatccccttttgctcattcatcgtatcacttttgaaataaatttcttatatatgttttcttggtccagGTTTCTTATATTAGCCAAAATTGGCCTGTTCAACACGTGGCAGCTAGCGAGGATGGGAAATACTTGGCGTTTGCTGGTTTACATGGCCTGATTTTGTATG
|||  || |  | |  |  ||  |      ||  |  ||  | || ||  ||||   | |   | || |||||  | |  |||| | |||||||||||||   ||||||||||||||||||||| ||||  |||||| |||||||||  ||||| ||  |||||||| | |||||| | || || || |
gttacgtgtt-taaattatgtacttgataattcgttgtttttagtctctattttatta-atgctcctaatatagttctctttgggctagGTTTCTTATATCTCCCAAAATTGGCCTGTTCAACATGTGGTGGCTAGCAAGGATGGGATGTACTTAGCAGTTGCTGGTCTCCATGGCTTAATCTTATACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattcatcgtatcacttttgaaataaatttcttatatatgttttcttggtccagGTTTCTTATATTAGCCAAAATTGGCCTGTTCAACACGTGGCAGCTAGCGAGGATGGGAAATACTTGGCGTTTGCTGGTTTACATGGCCTGATTTTGTATG
                                       tgttttctt  CT-rich tract
          tatcacttttgaaata  TA-rich tract