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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattaaagatatgcaaaacatgattgagtgatcaatacaaatgcaaaacttatagaatacaaaacttattatatacagGACATGGGGAAGGTACCGATAATGTATATCTTAGCTGCGTTTATACCTGGTGTGATGATAGCAGGACTTTACTTCTTCGACCATAGTGTAGCTTCACAAA

Basic information

species Arabidopsis thaliana
transcript AT5G25430.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G25430.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv04s0008g04980.t01 (Vitis vinifera), 3'ss of exon 6
gtaagatt--aaagatatgcaaaacatgattgagtgatcaatacaaatgcaaaac--ttatagaatacaaaact---tattata-----------tacagGACATGGGGAAGGTACCGATAATGTATATCTTAGCTGCGTTTATACCTGGTGTGATGATAGCAGGACTTTACTTCTTCGACCATAGTGTAGCTTCACAAA
||  || |   | | | | | ||| |   || |    |  | | || | |  ||   | |||   | |  || |   |  |  |           | ||||| ||||| ||||| ||  |   ||| ||||| ||||| || ||||| | |||||||||||| ||  | ||||| |||||||| |||||||||||||| |
gtgggaatcagaggtttttcgaaatacatttaacaacttgacaaaagtacgtaatagtgataacgttctgaattatgtgcttcaagtgctcaaattgcagGATATGGGAAAGGTCCCATTGGGGTACATCTTTGCTGCCTTGATACCAGCTGTGATGATAGCGGGCTTATACTTTTTCGACCACAGTGTAGCTTCACAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagtgatcaatacaaatgcaaaacttatagaatacaaaacttattatatacagGACATGGGGAAGGTACCGATAATGTATATCTTAGCTGCGTTTATACCTGGTGTGATGATAGCAGGACTTTACTTCTTCGACCATAGTGTAGCTTCACAAA
                     aaaacttatagaatac  TA-rich tract