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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcatggcagtaagatataatgcggttctggactggttttgagtgtttcttatttgttacagCAAAGACATTTGGTGTCACGGATTTCATCAATTCAAATGACCTCTCTGAACCTATACCCCAG

Basic information

species Arabidopsis thaliana
transcript AT5G24760.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125059629|gb|EL128306.1|EL128306
EST:     AGCAGCTCAAATACTTGGGGTTGATATAAATCCCGCTAAGGCTGAACAAG                         CAAAGACATTTGGTGTCACGGATTT
genomic: AGCAGCTCAAATACTTGGGGTTGATATAAATCCCGCTAAGGCTGAACAAGgtatatcatg ... tttgttacagCAAAGACATTTGGTGTCACGGATTT
EST: gi|124989267|gb|EL061596.1|EL061596
EST:     AGCAGCTCAAATACTTGGGGTTGATATAAATCCCGCTAAGGCTGAACAAG                         CAAAGACATTTGGTGTCACGGATTT
genomic: AGCAGCTCAAATACTTGGGGTTGATATAAATCCCGCTAAGGCTGAACAAGgtatatcatg ... tttgttacagCAAAGACATTTGGTGTCACGGATTT
EST: gi|86085430|gb|DR381189.1|DR381189
EST:     AGCAGCTCAAATACTTGGGGTTGATATAAAT-CCGCTAAGGCTGAACAAG                         CAAAGACATTTGGTGTCACGGATTTCATCAATTCAAATGACCTCTCTGAAC
genomic: AGCAGCTCAAATACTTGGGGTTGATATAAATCCCGCTAAGGCTGAACAAGgtatatcatg ... tttgttacagCAAAGACATTTGGTGTCACGGATTTCATCAATTCAAATGACCTCTCTGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtaagatataatgcggttctggactggttttgagtgtttcttatttgttacagCAAAGACATTTGGTGTCACGGATTTCATCAATTCAAATGACCTCTCTGAACCTATACCCCAG
                                      tttcttattt  CT-rich tract
                                      tttcttatttgtta  TA-rich tract