Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcacattttctgtttcaactcgtatattttggctatgttttccttggattaatccttcacatgcatgtggctttggatagATTGGTTTCGTGCATATATGGGAAGCAGCTACGTTATCTATTGAGAGAGAAGGTTACACCATCAAGTGTAATAACGATCTCACAATTACAGAAAAGTTCT

Basic information

species Arabidopsis thaliana
transcript AT5G23510.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23510.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 17
--------------------------------------------------------gtatcacattttctgtttcaactcgtatattttggctatgttttccttggattaatccttcacatgcatgtggctttggatagATTGGTTTCGTGCATATATGGGAAGCAGCTACGTTATCTATTGAGAGAGAAGGTTACACCATCAAGTGTAAT------AACGATCTCACAATTACAGAAAAGTTCT
                                                         ||||| | | |       |||   | | ||||   | |    | |||  |    |    |  |  | | |   ||||   ||  ||| |   |  ||||||||||| ||||||| ||  | ||| |||| |||||||||| ||||||||||| |      |  | |     | |  | || |      
gtatgactattacaacaaatacccctagtttataattctttgttgatcttgttttgctatcaaagtcttatcaggaacatatgtttttttaatttcaccttcttaaagagcttagcctgaatcttttaattttg--cagGCTGGATATCTTGATATATGGGAACCAGCTACTTTGGCCATTAAGAGGGAAGGTTACAGCATCAAGTGTACTGGACCTAGTGGTGCTGTAGTCTCTGAGA------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttggctatgttttccttggattaatccttcacatgcatgtggctttggatagATTGGTTTCGTGCATATATGGGAAGCAGCTACGTTATCTATTGAGAGAGAAGGTTACACCATCAAGTGTAATAACGATCTCACAATTACAGAAAAGTTCT
                     gattaat  putative branch site (score: 3)
        tatgtttt  TA-rich tract