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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttcagatttctctctttccctttttggttctccggtttttttccttgtttctgagatttacatctgaactagaactgaaattttgacatattggattgcacaacgagataatcggtttggttttatcaatgagaattgcaaagctgcatttgtgctaatttaaaatctgagtcccatgttgttttttcagCTGACAGTTGCAAGCATCAAAATGGGTAGACCAGAGATTGCAGAAAAGGCGGTTGAGTTAGCCGAGAGACGGATTTCCTTAGACAAATGGCCCGAGTACT

Basic information

species Arabidopsis thaliana
transcript AT5G22510.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124810377|gb|EH895405.1|EH895405
EST:     TGGAGGTGCATGGCCAACTCTGCTATGGCAG                         CTGACAGTTGCAAGCATCAAAATGGGTAGACCAGAGATTGCAGAAAAGGCG
genomic: TGGAGGTGCATGGCCAACTCTGCTATGGCAGgttagttcag ... gttttttcagCTGACAGTTGCAAGCATCAAAATGGGTAGACCAGAGATTGCAGAAAAGGCG
EST: gi|116434339|gb|EG476931.1|EG476931
EST:     TCCTTGGTCTTATCACAATGGAGGTGCATGGCCAACTCTGCTATGGCAG                         CTGACAGTTGCAAGCATCAAAATGGGTAGACCAGAGATTGCAGAAAAGGCG
genomic: TCCTTGGTCTTATCACAATGGAGGTGCATGGCCAACTCTGCTATGGCAGgttagttcag ... gttttttcagCTGACAGTTGCAAGCATCAAAATGGGTAGACCAGAGATTGCAGAAAAGGCG
EST: gi|125309035|gb|EL323120.1|EL323120
EST:     GCCAACTCTGCTATGGCAG                         CTGACAGTTGCAAGCATCAAAATGGGTAGACCAGAGATTGCAGAAAAAGGC
genomic: GCCAACTCTGCTATGGCAGgttagttcag ... gttttttcagCTGACAGTTGCAAGCATCAAAATGGGTAGACCAGAGATTGCAGAAAA-GGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcaaagctgcatttgtgctaatttaaaatctgagtcccatgttgttttttcagCTGACAGTTGCAAGCATCAAAATGGGTAGACCAGAGATTGCAGAAAAGGCGGTTGAGTTAGCCGAGAGACGGATTTCCTTAGACAAATGGCCCGAGTACT
                 tgctaat  putative branch site (score: 2)
                                           ttgttttttc  putative PPT
                    taatttaaaatctga  TA-rich tract