1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcagacttcagatgtttatcgtttttcttatcccaatatatgcatgtattatttatttacgtatctttgtatccgttctcgattaatgatagGTACCTTGGGATATGTAATGAGTGAGCTTGAAGATGGCAAGCCTCTAAGCCAAGTTGTTCAAGCTGCCAAAAAGCTGGGGTACACTGAACCAG
species | Arabidopsis thaliana |
transcript | AT5G21060.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATAATTTCGTCTGGAGATCCTGTTCATAGGATTGTCGGTAGTTTGAGCG GGACCTTGGGATATGTAATGAGTGEST: gi|164064009|gb|ES117918.1|ES117918
genomic: CATAATTTCGTCTGGAGATCCTGTTCATAGGATTGTCGGTAGTTTGAGCGgtaagcagac ... ttaatgatagGTACCTTGGGATATGTAATGAGTG
EST: CCTGTTCATAGGATTGTCGGTAGTTTGAGCG GTACCTTGGGATATGTAATGAGTGAGCTTGAAGATGGCAAGCCTCTAAGCCEST: gi|125044233|gb|EL116502.1|EL116502
genomic: CCTGTTCATAGGATTGTCGGTAGTTTGAGCGgtaagcagac ... ttaatgatagGTACCTTGGGATATGTAATGAGTGAGCTTGAAGATGGCAAGCCTCTAAGCC
EST: ATAGGATTGTCGGTAGTTTGAGCG GTACCTTGGGTATATGTAATGAGTGAGCTTGAAGATGGCAAGCCTCTAAGC
genomic: ATAGGATTGTCGGTAGTTTGAGCGgtaagcagac ... ttaatgatagGTACCTTGGG-ATATGTAATGAGTGAGCTTGAAGATGGCAAGCCTCTAAGC
atatgcatgtattatttatttacgtatctttgtatccgttctcgattaatgatagGTACCTTGGGATATGTAATGAGTGAGCTTGAAGATGGCAAGCCTCTAAGCCAAGTTGTTCAAGCTGCCAAAAAGCTGGGGTACACTGAACCAG
gattaat putative branch site (score: 3)
tattatttatttacgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcagacttcagatgtttatcgtttttcttatcccaatatatgcatgtattatttatttacgtatctttgtatccgttctcgattaatgatagGTACCTTGGGATATGTAATGAGTGAGCTTGAAGATGGCAAGCCTCTAAGCCAAGTTGTTCAAGCTGCCAAAAAGCTGGGGTACACTGAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG