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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatactcttgaaacattcatgcttttgatgttctctggtaactttgaatgaatttacagtgctttactcttgaatattctggtgtagGCTTATCAGCAATCGATAAACATGTCCGTTAGTAGCAAATACATGCCTGACTCCACTGGCGAATACCTGAACTATGGAATTGCAGCGAGCGAG

Basic information

species Arabidopsis thaliana
transcript AT5G20960.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116475730|gb|EG518322.1|EG518322
EST:     TGGTGGAGCAAACAGGAGGACCTGTGACTTGGGATAGTCTCATCAGTCAG                         GCTTATCAGCAATCGATAAACATGTCCGTTAGTAGCAAATACATGCCTGAC
genomic: TGGTGGAGCAAACAGGAGGACCTGTGACTTGGGATAGTCTCATCAGTCAGgttcatactc ... tctggtgtagGCTTATCAGCAATCGATAAACATGTCCGTTAGTAGCAAATACATGCCTGAC
EST: gi|125209018|gb|EL223972.1|EL223972
EST:     ACTTGGGATAGTCTCATCAGTCAG                         GCTTATCAGCAATCGATAAACATGTCCGTTAGTAGCAAATACATGCCTGAC
genomic: ACTTGGGATAGTCTCATCAGTCAGgttcatactc ... tctggtgtagGCTTATCAGCAATCGATAAACATGTCCGTTAGTAGCAAATACATGCCTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctggtaactttgaatgaatttacagtgctttactcttgaatattctggtgtagGCTTATCAGCAATCGATAAACATGTCCGTTAGTAGCAAATACATGCCTGACTCCACTGGCGAATACCTGAACTATGGAATTGCAGCGAGCGAG
   tggtaac  putative branch site (score: 2)
          tttgaatgaattta  TA-rich tract