1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgtttgaaatttgagtaaggaaagaaatctcaagattgcactctgtcaaagtaaaatggcatttgatacaaacattgacctttgatgccaaaaaaacagGCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTCATGCATGTGCACACAATCCCACTGGAGTTGACCCAACCTCTGAACAGTG
species | Arabidopsis thaliana |
transcript | AT5G19550.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAG GCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTCEST: gi|164237982|gb|ES129770.1|ES129770
genomic: GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAGgttgattctt ... aaaaaaacagGCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTC
EST: GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAG GCTTGCTCGAGGATCTTGGCGCTGCACCATCEST: gi|116439128|gb|EG481720.1|EG481720
genomic: GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAGgttgattctt ... aaaaaaacagGCTTGCTCGAGGATCTTGGCGCTGCACCATC
EST: GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAG GCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTCEST: gi|116442567|gb|EG485159.1|EG485159
genomic: GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAGgttgattctt ... aaaaaaacagGCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTC
EST: GGAGTATTTCCGCTACTACGATCCTGCAACCCGTGGTCTTGACTTCAAAG GCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTC
genomic: GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAGgttgattctt ... aaaaaaacagGCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTC
gtcaaagtaaaatggcatttgatacaaacattgacctttgatgccaaaaaaacagGCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTCATGCATGTGCACACAATCCCACTGGAGTTGACCCAACCTCTGAACAGTG
aaaaaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtttgaaatttgagtaaggaaagaaatctcaagattgcactctgtcaaagtaaaatggcatttgatacaaacattgacctttgatgccaaaaaaacagGCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTCATGCATGTGCACACAATCCCACTGGAGTTGACCCAACCTCTGAACAGTG
-tgtttga
- - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - -aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaaa