1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaaaaatttcgtaagaacctgcacaaacacataaactctgctgcctcaagagagtcttctgacatttcttctttttcattttgtagGTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAACAAAGACGATCAGAAGAAGTGGTTGATCCAAACCTTGAAACAAAACCATCTACAAGTGCTTTGA
species | Arabidopsis thaliana |
transcript | AT5G18500.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAG GTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAACEST: gi|164232001|gb|ES128395.1|ES128395
genomic: AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAGgtaaaaaatt ... cattttgtagGTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAAC
EST: AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAG GTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAACEST: gi|124725473|gb|EH816875.1|EH816875
genomic: AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAGgtaaaaaatt ... cattttgtagGTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAAC
EST: AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAG GTACATTTGGTGGAGTGGCTGAAGATGATGGEST: gi|164169162|gb|ES207560.1|ES207560
genomic: AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAGgtaaaaaatt ... cattttgtagGTACATTTGGTGGAGTGGCTGAAGATGATGG
EST: AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACC-GAG GTACATTTGGTGGAGTGGCTGAAG
genomic: AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAGgtaaaaaatt ... cattttgtagGTACATTTGGTGGAGTGGCTGAAG
taaactctgctgcctcaagagagtcttctgacatttcttctttttcattttgtagGTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAACAAAGACGATCAGAAGAAGTGGTTGATCCAAACCTTGAAACAAAACCATCTACAAGTGCTTTGA
ttctgac putative branch site (score: 2)
tcttctgacatttctt CT-rich tract
ttctttttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaaatttcgtaagaacctgcacaaacacataaactctgctgcctcaagagagtcttctgacatttcttctttttcattttgtagGTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAACAAAGACGATCAGAAGAAGTGGTTGATCCAAACCTTGAAACAAAACCATCTACAAGTGCTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT