1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtttctacatcaaatcgttatggttaacttttaaatttttttgatctaatctgaacaatgttactattgcttctgtctgcagCCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTTTCAGTTGTCGTCTGTTTTACTGCTGTTCTGTTATCTCTTGGAATTTCCT
species | Arabidopsis thaliana |
transcript | AT5G18480.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACTTGGTTATGGCGGTGTATCTACCATGAGTCCCAGCTATCAG CCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTTEST: gi|124755816|gb|EH845946.1|EH845946
genomic: CACTTGGTTATGGCGGTGTATCTACCATGAGTCCCAGCTATCAAgtgagtttct ... ctgtctgcagCCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTT
EST: ATGGAACACTTGGTTATGGCGGTGTATCTACCATGAGTCCCAGCTATCAA CCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTTEST: gi|125304868|gb|EL318953.1|EL318953
genomic: ATGGAACACTTGGTTATGGCGGTGTATCTACCATGAGTCCCAGCTATCAAgtgagtttct ... ctgtctgcagCCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTT
EST: ATGGAACACTTGGTTATGGCGGTGTATCTACCATGAGTCCCAGCTATCAA CCCCACAGTGGCAACGCACAGTEST: gi|124973678|gb|EL047288.1|EL047288
genomic: ATGGAACACTTGGTTATGGCGGTGTATCTACCATGAGTCCCAGCTATCAAgtgagtttct ... ctgtctgcagCCCCACAGTGGCAACGCACAGT
EST: ACTTGGTTATGGCGGTGTATCTACCATGTAGTCCCAGCTATCAA CCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTT
genomic: ACTTGGTTATGGCGGTGTATCTACCATG-AGTCCCAGCTATCAAgtgagtttct ... ctgtctgcagCCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTT
cttttaaatttttttgatctaatctgaacaatgttactattgcttctgtctgcagCCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTTTCAGTTGTCGTCTGTTTTACTGCTGTTCTGTTATCTCTTGGAATTTCCT
atctaat putative branch site (score: 3)
cttctgtct putative PPT
aaatttttttgatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttctacatcaaatcgttatggttaacttttaaatttttttgatctaatctgaacaatgttactattgcttctgtctgcagCCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTTTCAGTTGTCGTCTGTTTTACTGCTGTTCTGTTATCTCTTGGAATTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT