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gtctgctatatctaaatcctggaatattttgcttatgtgttataccctgggtttcgaacattaaaatacacttatattatcttgtactgtgtttaactttcttctatgtagGATGATTTTGATGAATTCAGTGATGTCGATGAGCTCTATAGCACGTTGCCACTAGATGAGGTGGAGGGTCTTGAAGATCTAGTTACCGCTGGCCCACTTG
species | Arabidopsis thaliana |
transcript | AT5G18230.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGAACGAAATCAG GATGATTTTGATGAATTCAGTGATGTCGATGAGCTCTATAGCACGTTGCCAEST: gi|125225035|gb|EL239120.1|EL239120
genomic: TTGAACGAAATCAGgtctgctata ... ttctatgtagGATGATTTTGATGAATTCAGTGATGTCGATGAGCTCTATAGCACGTTGCCA
EST: AAATGACGTCAAAGATTTTCTGGATGATTATGTTGAACGAAATCAG GATGATTTTGATGAATTCAGTGATGTCGATGAGCTEST: gi|124777198|gb|EH867141.1|EH867141
genomic: AAATGACGTCAAAGATTTTCTGGATGATTATGTTGAACGAAATCAGgtctgctata ... ttctatgtagGATGATTTTGATGAATTCAGTGATGTCGATGAGCT
EST: AAATGACGTCAAAGATTTTCTGGATGATTTATGTTGAACGAAATCAG GATGATTTTGATGAATTCAGTGATGTCGATGAGCT
genomic: AAATGACGTCAAAGATTTTCTGGATGA-TTATGTTGAACGAAATCAGgtctgctata ... ttctatgtagGATGATTTTGATGAATTCAGTGATGTCGATGAGCT
aacattaaaatacacttatattatcttgtactgtgtttaactttcttctatgtagGATGATTTTGATGAATTCAGTGATGTCGATGAGCTCTATAGCACGTTGCCACTAGATGAGGTGGAGGGTCTTGAAGATCTAGTTACCGCTGGCCCACTTG
gtttaac putative branch site (score: 3)
tttaactttcttct CT-rich tract
taaaatacacttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgctatatctaaatcctggaatattttgcttatgtgttataccctgggtttcgaacattaaaatacacttatattatcttgtactgtgtttaactttcttctatgtagGATGATTTTGATGAATTCAGTGATGTCGATGAGCTCTATAGCACGTTGCCACTAGATGAGGTGGAGGGTCTTGAAGATCTAGTTACCGCTGGCCCACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA