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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcactcttctcctctcaccacacttccttctgattgcaagattcttgatttgattcatgttcgtgtcatgtggcagGATGTCTCCAAACATGGTAGCCTGCATTGCAGTTGAGTCCATATCTATTCTTGAGAAACTTCATATGAAAGG

Basic information

species Arabidopsis thaliana
transcript AT5G18190.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18190.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv08s0007g07420.t01 (Vitis vinifera), 3'ss of exon 6
---------------gtaagcactcttctcctctcac-cacacttccttctgattgcaagattcttgatttgattcatgttcgt----gtcatgtggcagGATGTCTCCAAACATGGTAGCCTGCATTGCAGTTGAGTCCATATCTATTCTTGAGAAACTTCATATGAAAGG
                    | ||||    ||||||| |||||   |     | || |   || ||    || ||    ||  |     || |||  ||||||||| ||||| ||||| || ||||||||||| ||| | ||||| ||||| ||||| ||||| ||||| ||
gtaagaaatagaatctctctctctctctctctctcacacacacacacacacaagtggacattttttttcctgtttttaatttatttaaatcctgtaacagGATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttccttctgattgcaagattcttgatttgattcatgttcgtgtcatgtggcagGATGTCTCCAAACATGGTAGCCTGCATTGCAGTTGAGTCCATATCTATTCTTGAGAAACTTCATATGAAAGG
                          atttgatt  TA-rich tract