1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagagcttttttttgctacaaaagcttacatattgttttgaaactttttaaaaactattagttggattttggtttgaagGGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCATCCAACTGATCCGGACGCGGATGAG
species | Arabidopsis thaliana |
transcript | AT5G18170.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGGATTGTGATATCCTCGTCCCTGCAGCACTTGGTGGTGCCATCAACAG GGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCAEST: gi|164000797|gb|EL971803.1|EL971803
genomic: GAGGATTGTGATATCCTCGTCCCTGCAGCACTTGGTGGTGTCATCAACAGgttagagctt ... tggtttgaagGGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCA
EST: CTCGTCCCTGCAGCACTTGGTGGTGTCATCAACAG GGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCAEST: gi|86055070|gb|DR350827.1|DR350827
genomic: CTCGTCCCTGCAGCACTTGGTGGTGTCATCAACAGgttagagctt ... tggtttgaagGGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCA
EST: TCCTCGTCCCTGCAGCACTTGGTGGTGTCATCAACAG GGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCAEST: gi|116445672|gb|EG488264.1|EG488264
genomic: TCCTCGTCCCTGCAGCACTTGGTGGTGTCATCAACAGgttagagctt ... tggtttgaagGGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCA
EST: AGGATTGTGATATCCTCGTCCCCTGCAGCACTTGGTGGTGCCATCAACAG GGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCAEST: gi|164033567|gb|ES040851.1|ES040851
genomic: AGGATTGTGATATCCTCGT-CCCTGCAGCACTTGGTGGTGTCATCAACAGgttagagctt ... tggtttgaagGGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCA
EST: GAGGATTGTGATATCCTCGTCCCTGCAGCACTTGGTGGTGTCATCAACAG GGAGAATGCGAATGAGATTAAAGCAAAGTTCATEST: gi|116386886|gb|EG429478.1|EG429478
genomic: GAGGATTGTGATATCCTCGTCCCTGCAGCACTTGGTGGTGTCATCAACAGgttagagctt ... tggtttgaagGGAGAATGCGAATGAGATTAAAGCAAAGTTCAT
EST: GAGGATTGTGATATCCTCGTCCCTGCAGCACTTGGTGGTGTCATCAACAG GGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCA
genomic: GAGGATTGTGATATCCTCGTCCCTGCAGCACTTGGTGGTGTCATCAACAGgttagagctt ... tggtttgaagGGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCA
cttacatattgttttgaaactttttaaaaactattagttggattttggtttgaagGGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCATCCAACTGATCCGGACGCGGATGAG
agcttac putative branch site (score: 3)
atattgttttgaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagagcttttttttgctacaaaagcttacatattgttttgaaactttttaaaaactattagttggattttggtttgaagGGAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCATCCAACTGATCCGGACGCGGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT