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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcttacaaggctaagatttctaaaaaacagaacaccgttttctcttattttctagtttccattgtgtgaagtaattcactcgaggctttgatgttgaaccagGTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGATCAACGGACAGAGCCACACTCAGTTTTTCATCAGTAGATGTACATTAGAG

Basic information

species Arabidopsis thaliana
transcript AT5G18100.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19798317|gb|AU229784.1|AU229784
EST:     GCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGATGTG                         GTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGAT
genomic: GCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGATGTGgtaatgctta ... gttgaaccagGTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGAT
EST: gi|163993934|gb|ES003098.1|ES003098
EST:     CGCAGGCTCGAGAGTTGGATGTG                         GTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTT-GAGAT
genomic: CGCAGGCTCGAGAGTTGGATGTGgtaatgctta ... gttgaaccagGTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGAT
EST: gi|164137809|gb|ES082978.1|ES082978
EST:     GAGTTGGATGTG                         GTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGAT
genomic: GAGTTGGATGTGgtaatgctta ... gttgaaccagGTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGAT
EST: gi|19877759|gb|AU238590.1|AU238590
EST:     GCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGATGTG                         GTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGAT
genomic: GCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGATGTGgtaatgctta ... gttgaaccagGTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGAT
EST: gi|125274394|gb|EL288479.1|EL288479
EST:     CGCAGGCTCGAGAGTTGGATGTG                         GTATCATCGGACTTCAATCATCTGCGGATGCTAAACTAT-GCTTTTGAGAT
genomic: CGCAGGCTCGAGAGTTGGATGTGgtaatgctta ... gttgaaccagGTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctagtttccattgtgtgaagtaattcactcgaggctttgatgttgaaccagGTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGATCAACGGACAGAGCCACACTCAGTTTTTCATCAGTAGATGTACATTAGAG
                                      ctttgat  putative branch site (score: 5)
                     aagtaatt  TA-rich tract