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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaagcctttcacctactgtttcttttgagtcgagaacaagtattgtgttttcatagactaatttcaaacactaaatgttaagtgaatcaatacttttttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTCTATGTTTTGAACCAG

Basic information

species Arabidopsis thaliana
transcript AT5G17770.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828476|gb|CK118160.1|CK118160
EST:     AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG                         GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: gi|86082325|gb|DR378084.1|DR378084
EST:     AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG                         GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: gi|124902718|gb|EH976798.1|EH976798
EST:     AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG                         GAAGAATTGGAGGGTCTTACTACCAATT
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATT
EST: gi|124774437|gb|EH864566.1|EH864566
EST:     AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG                         GAAGAATTGGAGGGTCTTACTACCAA
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAA
EST: gi|125301329|gb|EL315414.1|EL315414
EST:     TTTACGCCAACGTCACATACGACGACATTCTCTTGAAG                         GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
genomic: TTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: gi|124764010|gb|EH854140.1|EH854140
EST:     CATACGACGACATTCTCTTGAAG                         GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
genomic: CATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: gi|86066425|gb|DR362182.1|DR362182
EST:     AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG                         GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: gi|164048173|gb|ES208085.1|ES208085
EST:     CATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG                         GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
genomic: CATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: gi|86066436|gb|DR362193.1|DR362193
EST:     AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG                         GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: gi|86082753|gb|DR378512.1|DR378512
EST:     AGGTGCATCTCATTTACGCCAACGTCATATACGACGACATTCTCTTGAAG                         GAAGAATTGGAGGGTCTTACTACCAATTACCNTGAACAATTTAAAATCTTC
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: gi|164053715|gb|ES142915.1|ES142915
EST:     GTCACATACGACGACATTCTCTTGAAG                         GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
genomic: GTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catagactaatttcaaacactaaatgttaagtgaatcaatacttttttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTCTATGTTTTGAACCAG
                 cactaaa  putative branch site (score: 2)
                                       tacttttttttttc  putative PPT
                               tgaatcaatacttttt  TA-rich tract