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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttaatcaacatcttctaatctcaaaagtctctttcttttgtgtcatcatatctttgtgttttttgtttgtttccggcatagGGTGTTAAAATCGTGTTCAAAGTCGGTTTAGCATTATTGAAGCATTGCCATGATGATTTGTTGAAATTGCCATTTGAGGAACTCATGCATGCTCTGAGGA

Basic information

species Arabidopsis thaliana
transcript AT5G15930.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080727|gb|DR376484.1|DR376484
EST:     CACTGCCTTTCCATTCAGCGCTACGAATTTGGGATGTGTTTCTAGCTGAG                         GGTGTTAAAATCGTGTTCAAAGTCGGTTTAGCATTATTGAAGCATTGCCAT
genomic: CACTTCCTTTCCATTCAGCGCTACGAATTTGGGATGTGTTTCTAGCTGAGgtacttttaa ... tccggcatagGGTGTTAAAATCGTGTTCAAAGTCGGTTTAGCATTATTGAAGCATTGCCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctctttcttttgtgtcatcatatctttgtgttttttgtttgtttccggcatagGGTGTTAAAATCGTGTTCAAAGTCGGTTTAGCATTATTGAAGCATTGCCATGATGATTTGTTGAAATTGCCATTTGAGGAACTCATGCATGCTCTGAGGA
                                ttttttgtttgtttcc  CT-rich tract
                                ttttttgtttgttt  TA-rich tract