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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttcttctggctccataagcacagtagatttttggtgtttctctgctgaaaaggatatcctggtttgttgttttgccagGTATACAGTGCAGGATTCTCAGCTCCATCTCCAATTCAAGCTCAGTCATGGCCAATTGCGATGCAAAACAGAGACATAGTAGCCATTGCTAAAACAGGCT

Basic information

species Arabidopsis thaliana
transcript AT5G14610.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G14610.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os01g36860.1 (Oryza sativa), 3'ss of exon 2
------------------gtgcttcttctggctccataagcacagtagatttttggtgtttctctgctgaaaaggatatcctggtttgttgtt-ttgccagGTATACAGTGCAGGATTCTCAGCTCCATCTCCAATTCAAGCTCAGTCATGGCCAATTGCGATGCAAAACAGAGACATAGTAGCCATTGCTAAAACAGGCT
                    |    || | ||| ||||   ||  ||   || |  | | ||  |  ||     | | |     |||    || ||  ||| || |  |||| |||||||||  |||| | ||||| |||||||||||||||||||||||  ||||      |||  | ||||| ||||| || ||||| |
ctactactaaagttttggagggaaattatagctacatatttacgatatccttatcct-tatccttattgtgtctgcttttgccatttccccttgttttcagATACAACGTGCTGGATTCTCAAGTCCAACGCCAATCCAAGCTCAGTCATGGCCAATTGCCTTGCAGTGTCAAGATGTTGTAGCTATTGCAAAGACAGGAT

upper sequence: AT5G14610.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os01g36860.2 (Oryza sativa), 3'ss of exon 1
---------------------------------------------------------------gtgcttcttctggctccataagcacagtagatttttggtgtttctctgctgaaaaggatatcctggtttgttgtt-ttgccagGTATACAGTGCAGGATTCTCAGCTCCATCTCCAATTCAAGCTCAGTCATGGCCAATTGCGATGCAAAACAGAGACATAGTAGCCATTGCTAAAACAGGCT
                                                                 |    || | ||| ||||   ||  ||   || |  | | ||  |  ||     | | |     |||    || ||  ||| || |  |||| |||||||||  |||| | ||||| |||||||||||||||||||||||  ||||      |||  | ||||| ||||| || ||||| |
gtacgatatcttaagttggactcatgcactgttgattctttgtttctactactaaagttttggagggaaattatagctacatatttacgatatccttatcct-tatccttattgtgtctgcttttgccatttccccttgttttcagATACAACGTGCTGGATTCTCAAGTCCAACGCCAATCCAAGCTCAGTCATGGCCAATTGCCTTGCAGTGTCAAGATGTTGTAGCTATTGCAAAGACAGGAT

upper sequence: AT5G14610.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G066440_T01 (Zea mays), 3'ss of exon 5
gtgcttcttctggct-ccataagc-acagta-gatttttggtgt--------------ttctctgctgaaaaggatatcc---tggtttgttgttttgccagGTATACAGTGCAGGATTCTCAGCTCCATCTCCAATTCAAGCTCAGTCATGGCCAATTGCGATGCAAAACAGAGACATAGTAGCCATTGCTAAAACAGGCT
  || | |||| | | | |||  | | |||| || ||||| | |              |  || | | | |   || ||     | | | |   ||| ||||||       ||||||||||| || ||| |||| || ||||||||||||||||||||||| ||| |    || || ||||||||  | || || ||||| |
--gccttttctcgttgctatagactatagtatgaattttgttctaaacacagatataatattcagataatactcatctctgaaggatatctaccttttccagGTTCTGCAAGCAGGATTCTCTGCACCAACTCCTATCCAAGCTCAGTCATGGCCAATTGCTATGAAGGGTAGGGATATAGTAGCTGTGGCAAAGACAGGTT

upper sequence: AT5G14610.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G481227_T01 (Zea mays), 3'ss of exon 2
gtgcttcttctggct-ccataagcacagta-gatttttggtgtttc-----tctgctgaaaaggatatcctggtttgttg------------ttttgccagGTATACAGTGCAGGATTCTCAGCTCCATCTCCAATTCAAGCTCAGTCATGGCCAATTGCGATGCAAAACAGAGACATAGTAGCCATTGCTAAAACAGGCT
   ||| ||||   | | ||||  | | || || ||||    || |     |||  |    ||   || ||  | | |              ||||||  | | | ||  ||||||||||| || ||| |||| || |||||||| ||||||||||||||           | || |||||||| || || || ||||| |
agcctttttctctttgctataactatattatgacttttatccttacacagatctagtattcagataatactcatctctgaagggtatctaccttttgcagGTTCTGCAA-GCAGGATTCTCTGCACCAACTCCTATCCAAGCTCAATCATGGCCAATTGCTCCAAGGGGTCGTGATATAGTAGCTATGGCGAAGACAGGTT

upper sequence: AT5G14610.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA05G08750.1 (Glycine max), 3'ss of exon 8
-----------gtgcttcttctggctccataagcacagtagatttttggtgtttctctgctgaaaaggatatcctggtttgttgttttgccagGTATACAGTGCAGGATTCTCAGCTCCATCTCCAATTCAAGCTCAGTCATGGCCAATTGCGATGCAAAACAGAGACATAGTAGCCATTGCTAAAACAGGCT
            ||         ||| | |  |  || ||  |  |   |   || |     |||   || |||||| || |  ||||   ||||| | | ||| || |||||||| ||| |||||||||| || ||||||||||| |||||  | |||   ||||| ||||| |||||||||||||||||||
gtggcttgcatatgagggacaatgcttcttccg-gcattaactcctctataagtcccaaagaaaaccaatctcctggattttcctttt-ttagGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCT

upper sequence: AT5G14610.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA19G00260.1 (Glycine max), 3'ss of exon 4
--------------------gtgcttcttctggctccataagcacagtagatttttggtgtttctctgctgaaaaggatatcctggtttgttgttttgccagGTATACAGTGCAGGATTCTCAGCTCCATCTCCAATTCAAGCTCAGTCATGGCCAATTGCGATGCAAAACAGAGACATAGTAGCCATTGCTAAAACAGGCT
                     ||     |   ||| | |  | ||| ||  |  |   |   || |     |||   || |||||| || |  ||||   ||||| | | ||| || |||||||| ||| |||||||||| || ||||||||||| |||||  | |||   ||||| ||||| |||||||||||||||||||
caagcattggtggcttgcatatgagggatgatgcttcttccg-acattaactcctctataagtcccaaagaaaaccaatctcctggattttcctttt-ttagGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagatttttggtgtttctctgctgaaaaggatatcctggtttgttgttttgccagGTATACAGTGCAGGATTCTCAGCTCCATCTCCAATTCAAGCTCAGTCATGGCCAATTGCGATGCAAAACAGAGACATAGTAGCCATTGCTAAAACAGGCT
                                           ttgtttt  CT-rich tract
                                           ttgtttt  TA-rich tract