1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tacaaagaacttgtataagttttcttctgcaattgatgtttctgattggttttggtcatgtacagttcatctgattgatttatttgaacggttatgtcagGTTGCTACTTTCATTGTTCAGAAAGTTTTGCTGGACGATGTTGGGCTTGAGTACATGTGCACGACAGCGGAGAGATTCTTTGCTCTGGGTCGGGTTTTGG
species | Arabidopsis thaliana |
transcript | AT5G12980.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCCATTGTG-CTCCGGACAATGGAGAATGGCAGCGAGTTATCAAAGACT GTTGCTACTTTCATTGTTCAGAAAGTTTTGCTGGACGATGTTGGGCTTGAGEST: gi|19878482|gb|AU239313.1|AU239313
genomic: TCCCATTGTGCCTCCGGACAATGGAGAATGGCAGCGAGTTATCAAAGACTgtaagtttgt ... gttatgtcagGTTGCTACTTTCATTGTTCAGAAAGTTTTGCTGGACGATGTTGGGCTTGAG
EST: TCCCATTGTGCCTCCGGACAATGGAGAATGGCAGCGAGTTATCAAAGACT GTTGCTACTTTCATTGTTCAGAAAGTTTTGCTGGACGATGTTGGGCTTGAG
genomic: TCCCATTGTGCCTCCGGACAATGGAGAATGGCAGCGAGTTATCAAAGACTgtaagtttgt ... gttatgtcagGTTGCTACTTTCATTGTTCAGAAAGTTTTGCTGGACGATGTTGGGCTTGAG
ttggttttggtcatgtacagttcatctgattgatttatttgaacggttatgtcagGTTGCTACTTTCATTGTTCAGAAAGTTTTGCTGGACGATGTTGGGCTTGAGTACATGTGCACGACAGCGGAGAGATTCTTTGCTCTGGGTCGGGTTTTGG
gattgat putative branch site (score: 4)
attgatttatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaaagaacttgtataagttttcttctgcaattgatgtttctgattggttttggtcatgtacagttcatctgattgatttatttgaacggttatgtcagGTTGCTACTTTCATTGTTCAGAAAGTTTTGCTGGACGATGTTGGGCTTGAGTACATGTGCACGACAGCGGAGAGATTCTTTGCTCTGGGTCGGGTTTTGG
- caaagaa
- - - - - - - - - - - -cttctgc
- - - - - - - - - - - - - - - - - - - - - - - -ggttttg