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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaccattacctgactttagtctttggttcattgtaacatgactttttgttttaagttctaaccatgatttgggaatggtaatattagGCAAGATCCCAAGAGAATGGCGACTGCACTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G12950.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12950.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: EFJ08149 (Selaginella moellendorffii), 3'ss of exon 6
gtactaccattacctgactttagtctttggttcattgtaacatgactttttgttttaagttctaaccatgatttgggaatggtaata--ttagGCAAGATCCCAAGAGAATGGCGACTGCACTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAG
                                         | |  ||| |    |||| || | |   ||| ||||  || | |||  | |||   ||||| |  ||| | |    | | |||  ||| |||||||||||||| ||||| ||||| ||||||||||||
---------------------------------------gtaaggatttatcaagtaagctcaatctgagatctgggcctgtttataattcagGTCCGATCCGAGTAGACTTGGAGATACTCTGGGAACCGAAAACGAGGAATCTTGTACAACTTACAACATGCTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacatgactttttgttttaagttctaaccatgatttgggaatggtaatattagGCAAGATCCCAAGAGAATGGCGACTGCACTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAG
                       ttctaac  putative branch site (score: 1)
          tttttgttttaagtt  TA-rich tract