1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caaagattttagacattattggtattattgtgtaacacaaagttaagtgggagtgtgttccataattttgtttctcaaagacttatcataatcttggcagGAATATACTCCTTCACACATGCATGTTGCATCGCACGAAAGCTGGAAAGTTGAAGAACTCGGAGATTACCCGGGACAAGAAAACAAGCCGCAATAAAAGC
species | Arabidopsis thaliana |
transcript | AT5G11950.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACATTGTGGTTTCTGCTCCAACAGCCAAAGAGCTTATGGAGAAGATGGAG GAATATACTCCTTCACACATGCATGTTGCATCGCACGAAAGCTGGAAAGTTEST: gi|124888410|gb|EH967312.1|EH967312
genomic: ACATTGTGGTTTCTGCTCCAACAGCCAAAGAGCTTATGGAGAAGATGGAGgtacattaag ... atcttggcagGAATATACTCCTTCACACATGCATGTTGCATCGCACGAAAGCTGGAAAGTT
EST: CCAAAGAGCTTATGGAGAAGATGGAG GAATATACTCCTTCACACATGCATGTTGCATCGCACGAAAGCTGGAAAGTTEST: gi|125284387|gb|EL298472.1|EL298472
genomic: CCAAAGAGCTTATGGAGAAGATGGAGgtacattaag ... atcttggcagGAATATACTCCTTCACACATGCATGTTGCATCGCACGAAAGCTGGAAAGTT
EST: ACATTGTGGTTTCTGCTCCAACAGCCAAAGAGCTTATGGAGAAGATGGAG GAATATACTCCTTCACACATGCATGTTGCATCGEST: gi|125087388|gb|EL146533.1|EL146533
genomic: ACATTGTGGTTTCTGCTCCAACAGCCAAAGAGCTTATGGAGAAGATGGAGgtacattaag ... atcttggcagGAATATACTCCTTCACACATGCATGTTGCATCG
EST: AGCTTAATGGAGAAGATGGAG GAATATACTCCTTCACACATGCATGTTGCATCGCACGAAAGCTGGAAAGTT
genomic: AGCTT-ATGGAGAAGATGGAGgtacattaag ... atcttggcagGAATATACTCCTTCACACATGCATGTTGCATCGCACGAAAGCTGGAAAGTT
agtgggagtgtgttccataattttgtttctcaaagacttatcataatcttggcagGAATATACTCCTTCACACATGCATGTTGCATCGCACGAAAGCTGGAAAGTTGAAGAACTCGGAGATTACCCGGGACAAGAAAACAAGCCGCAATAAAAGC
ataattttgtttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaagattttagacattattggtattattgtgtaacacaaagttaagtgggagtgtgttccataattttgtttctcaaagacttatcataatcttggcagGAATATACTCCTTCACACATGCATGTTGCATCGCACGAAAGCTGGAAAGTTGAAGAACTCGGAGATTACCCGGGACAAGAAAACAAGCCGCAATAAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA