Sequence
atgc intronic sequence ATGC exonic sequencegtaagtccaaaagcaaaaactctttaaaatcttatcaatggttttatattatgtttctttgatggtaaccagagtttaaaaactgatataacacagGAAGAGTAGCGGTTTCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G10510.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G10510.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA01G02760.1 (Glycine max), 3'ss of exon 6
gtaagtccaaaagcaaaaactctttaaa--atcttatcaatggttttatattatgtttctttgatggtaacca--gagtttaaaaactgatataac-acagGAAGAGTAGCGGTTTCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGG
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-----------------gtttgcttgagttgtcctattaaaattctagcattgtacttctacatacgcagctactgaatattcggatttccattcttgcagGAAAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAG-------------------------------------------------
upper sequence: AT5G10510.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA09G33240.1 (Glycine max), 3'ss of exon 6
gtaagtccaaaagcaaaaactctttaaaatcttatcaatggttttatattatgtttctttgatggtaaccagagtttaaaaactgatataacacagGAAGAGTAGCGGTTTCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGG
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----gtttgcttgacttgccccattaaatttttagcattgtacttctac-atatgcagctactgaaaatttggattttcattct-------tgcagGAAAAGTAGTGGTTTCTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAG-------------------------------------------------
upper sequence: AT5G10510.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv00s0772g00020.t01 (Vitis vinifera), 3'ss of exon 5
gtaagtccaaaagcaaaaactctttaaaatcttatcaatggttttatattatgtttcttt-gatggtaaccagagtttaaaaactgatataacacagGAAGAGTAGCGGTT--TCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGG----------------------------
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----------------------gtttgaacatttccattcatttga-agcatacaactttcggtgttgagtccattttcgaca-tattcttttccattaagactacatattagcttgttgtaaagcgggcaagtataatgatcttgca-gGCATCATCAACAAGGTCGATGGCAAGCAAGGATAGGTCGAGTTGCTGGAAATAAAGACCTGTACCTGGGGACATTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164093536|gb|ES076881.1|ES076881EST: TGAAGCACATGACCAAGCAAGAGTTCATTGCCTCCCTCAGGAG GAAGAGTAGCGGTTTCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAG
genomic: TGAAGCACATGACCAAGCAAGAGTTCATTGCCTCCCTCAGGAGgtaagtccaa ... tataacacagGAAGAGTAGCGGTTTCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAG
EST:
gi|125268708|gb|EL282793.1|EL282793EST: GAGGAAATGGAGCACATGACCAAGCAAGAGTTCATTGCCTCCCTCAGGAG GAAGAGTAGCGG
genomic: GAGGAAATGAAGCACATGACCAAGCAAGAGTTCATTGCCTCCCTCAGGAGgtaagtccaa ... tataacacagGAAGAGTAGCGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttatattatgtttctttgatggtaaccagagtttaaaaactgatataacacagGAAGAGTAGCGGTTTCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGG
tttaaaaactgatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtccaaaagcaaaaactctttaaaatcttatcaatggttttatattatgtttctttgatggtaaccagagtttaaaaactgatataacacagGAAGAGTAGCGGTTTCTCTAGAGGAGCTTCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG