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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtgttcactctattctcatgtttcttcttatttttacgactttttcctctgtctcaaacctctgtttctgtttcagGCTTTTGCACGTTTGAGTGCTGTGTACGGTGGGACTTACATGCTCAACAAGCCCGAATGCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G09550.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G09550.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os03g16900.1 (Oryza sativa), 3'ss of exon 7
gttcgtgttcactctattctcatgtttcttcttatttttacgactt----tttcctctgtctcaaacctctgtttctgtttcagGCTTTTGCACGTTTGAGTGCTGTGTACGGTGGGACTTACATGCTCAACAAGCCCGAATGCAAG
      ||   |||  |||  ||  |     || |    ||  |||    ||   ||   || ||||      |  |||   |||| ||||| |||||||||||||| || ||||| || |||||||| |||||  | |||||||||
------gtatgctcagttcaaataatctggattctccacacagcttcagcttcattccagctgaaactctgcatattgtaatagGCCTTTGCTCGTTTGAGTGCTGTTTATGGTGGCACATACATGCTAAACAAAGCAGAATGCAAG

upper sequence: AT5G09550.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv00s0313g00050.t01 (Vitis vinifera), 3'ss of exon 7
gttcgtgttcactctattct-catgtttcttctt-atttttacgactttttcctctgtctcaaacctctgtttctgtttcagGCTTTTGCACGTTTGAGTGCTGTGTACGGTGGGACTTACATGCTCAACAAGCCCGAATGCAAG
||| || |||   | |   | || |  |||  |  ||  |||| |   |   |  || |   |    |    | | || ||||| ||||| ||| |||||||||| || ||||| || ||||||||||||||||| |||||||||
gtttgttttcctccaaaattacaagcatctgttggatgattacaaaactg--caatgacattatgtgcctcatgttttgcagGCATTTGCTCGTCTGAGTGCTGTTTATGGTGGTACCTACATGCTCAACAAGCCAGAATGCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttcttatttttacgactttttcctctgtctcaaacctctgtttctgtttcagGCTTTTGCACGTTTGAGTGCTGTGTACGGTGGGACTTACATGCTCAACAAGCCCGAATGCAAG
                                     cctctgtttctgtttc  CT-rich tract
      ttattttta  TA-rich tract