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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagccacaaactatttcttactctttatgtcaaaaaatatctgagaacatagaagatacagaaatgtacttgtttgatattggatatatactttttgcagGTAAGATCTTCATATAGAGCAGGAGAGCTTTTTGTTAAGACAATGGTGAAAGAAAGCTACTCTAAATCCTTGTCTTAATAACAACAATGGCTACTATAAT

Basic information

species Arabidopsis thaliana
transcript AT5G08415.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085291|gb|DR381050.1|DR381050
EST:     AAACATACGGAGAATCAATAGGATTTCGTTATGTTGCAAGTGGTCCACTG                         GTAAGATCTTCATATAGAGCAGGAGAGCTTTTTGTTAAGACAATGGTGAAA
genomic: AAACATACGGAGAATCAATAGGATTTCGTTATGTTGCAAGTGGTCCACTGgtaaagccac ... ctttttgcagGTAAGATCTTCATATAGAGCAGGAGAGCTTTTTGTTAAGACAATGGTGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatagaagatacagaaatgtacttgtttgatattggatatatactttttgcagGTAAGATCTTCATATAGAGCAGGAGAGCTTTTTGTTAAGACAATGGTGAAAGAAAGCTACTCTAAATCCTTGTCTTAATAACAACAATGGCTACTATAAT
                          gtttgat  putative branch site (score: 5)
                                           tacttttt  putative PPT
                                      atatatacttttt  TA-rich tract