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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttttcttatcttatcgctctcttattagaaacttcatataatccggagtttctaatttcttcttctttcttttttttttggcagATTTGCAGCTGCATTAGCTGAGCTAAAGGTTGACTGCTGGGTTCTTAACGTCATCCCAGTGAGTGGTCCCAACACATTGCCTGTTATATATGACCGTGGA

Basic information

species Arabidopsis thaliana
transcript AT5G06050.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116471162|gb|EG513754.1|EG513754
EST:     AAGCAGATAGGACTCAGAAATGTCTTGGACATGAGAGCTGGATTTGGCGG                         ATTTGCAGCTGCATTAGCTGAGCTAAAGGTTGACTGCTGGGTTCTTAACGT
genomic: AAGCAGATAGGACTCAGAAATGTCTTGGACATGAGAGCTGGATTTGGCGGgtactttttc ... tttttggcagATTTGCAGCTGCATTAGCTGAGCTAAAGGTTGACTGCTGGGTTCTTAACGT
EST: gi|164175380|gb|ES016225.1|ES016225
EST:     AAGCAGATAGGACTCAGAAATGTCTTGGACATGAGAGCTGGATTTGGCGG                         ATTTGCAGCTG
genomic: AAGCAGATAGGACTCAGAAATGTCTTGGACATGAGAGCTGGATTTGGCGGgtactttttc ... tttttggcagATTTGCAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttcatataatccggagtttctaatttcttcttctttcttttttttttggcagATTTGCAGCTGCATTAGCTGAGCTAAAGGTTGACTGCTGGGTTCTTAACGTCATCCCAGTGAGTGGTCCCAACACATTGCCTGTTATATATGACCGTGGA
                    ttctaat  putative branch site (score: 2)
                   tttctaatttcttctt  CT-rich tract
                       taatttcttcttcttt  TA-rich tract