1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcttgtctttacaatacatgaaattttcattatcttcccattaaatgtctgttgaaatcatgatgggggacttgtaggatttgtattgatgttcttgcaaggttacttatggacataatagttttctgctcgaggacataaataactttatagtattttgcaccagGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGATCCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACC
species | Arabidopsis thaliana |
transcript | AT5G05780.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACCCTCGCGACTGAG GTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGEST: gi|125203581|gb|EL218535.1|EL218535
genomic: ATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACCCTCGCGACTGAGgttcttgtct ... tttgcaccagGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGG
EST: CAACAATCAGTACCCTCGCGACTGAG GTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGEST: gi|86079670|gb|DR375427.1|DR375427
genomic: CAACAATCAGTACCCTCGCGACTGAGgttcttgtct ... tttgcaccagGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAG
EST: AAAGATACAACAATCAGTACCCTAGCGACTGAG GTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAG
genomic: AAAGACACAACAATCAGTACCCTCGCGACTGAGgttcttgtct ... tttgcaccagGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAG
gacataatagttttctgctcgaggacataaataactttatagtattttgcaccagGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGATCCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACC
aaataac putative branch site (score: 2)
acataaataactttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttgtctttacaatacatgaaattttcattatcttcccattaaatgtctgttgaaatcatgatgggggacttgtaggatttgtattgatgttcttgcaaggttacttatggacataatagttttctgctcgaggacataaataactttatagtattttgcaccagGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGATCCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA