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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtgatggagagaacatttctcaacaactttgcattttgtacttgtggataaaccatcaatgctgttttcgttctgttattcagGCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTAAAGCAG

Basic information

species Arabidopsis thaliana
transcript AT5G05730.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116424184|gb|EG466776.1|EG466776
EST:     ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAG                         GCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTA
genomic: ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAGgttggtgatg ... tgttattcagGCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTA
EST: gi|116398981|gb|EG441573.1|EG441573
EST:     ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAG                         GCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTA
genomic: ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAGgttggtgatg ... tgttattcagGCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTA
EST: gi|164052297|gb|ES027507.1|ES027507
EST:     ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAG                         GCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAAT
genomic: ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAGgttggtgatg ... tgttattcagGCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAAT
EST: gi|116399901|gb|EG442493.1|EG442493
EST:     ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAG                         GCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTA
genomic: ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAGgttggtgatg ... tgttattcagGCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcattttgtacttgtggataaaccatcaatgctgttttcgttctgttattcagGCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTAAAGCAG
                                    ttttcgttct  CT-rich tract
     ttttgta  TA-rich tract