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gtaatctcctctgtatttgatttgcagtcgctcttaagatactctctaaacaatattatcctatggatagGTTGGAATTGTCAAAGATATTCGTGAGTCAATGCTTGAAGAAGTAGATTTCAATAAGGAGGCTCAAAACATTGAGTCATTTAAGAGATATCTTGAAACCA
species | Arabidopsis thaliana |
transcript | AT5G05200.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCCCGTATATTTGAGTTCCTTAGTCCTGAGTTTAGCCGTACTTCACTG GTTGGAATTGTCAAAGATATTCGTGAGTCAATGCTTGAAGAAGTAGATTTCEST: gi|124910468|gb|EH984548.1|EH984548
genomic: TTCCCGTATATTTGAGTTCCTTAGTCCTGAGTTTAGCCGTACTTCACTGgtaatctcct ... ctatggatagGTTGGAATTGTCAAAGATATTCGTGAGTCAATGCTTGAAGAAGTAGATTTC
EST: TTCCCGTATATTTGAGTTCCTTAGTCCTGAGTTTTAGCCGTACTTCACTG GTTGGAATTGTCAAAGATATTCGTGAGTCAATGCTTGAAGAAGTAGATTTCEST: gi|125266852|gb|EL280937.1|EL280937
genomic: TTCCCGTATATTTGAGTTCCTTAGTCCTGAG-TTTAGCCGTACTTCACTGgtaatctcct ... ctatggatagGTTGGAATTGTCAAAGATATTCGTGAGTCAATGCTTGAAGAAGTAGATTTC
EST: CCTTAGTCCTGAGTTTAGCCGTACTTCACTG GTTGGAATTGTCAAAGATATTCGTGAGTCAATGCTTGAAGAAGTAGATTTCEST: gi|124939381|gb|EL015927.1|EL015927
genomic: CCTTAGTCCTGAGTTTAGCCGTACTTCACTGgtaatctcct ... ctatggatagGTTGGAATTGTCAAAGATATTCGTGAGTCAATGCTTGAAGAAGTAGATTTC
EST: TTTCCCGTATATTTGAGTTCCTTAGTCCTGAGTTTAGCCGTACTTCACTG GCTGGAATTGTCAAAGATATTCGTGAG
genomic: TTTCCCGTATATTTGAGTTCCTTAGTCCTGAGTTTAGCCGTACTTCACTGgtaatctcct ... ctatggatagGTTGGAATTGTCAAAGATATTCGTGAG
tttgatttgcagtcgctcttaagatactctctaaacaatattatcctatggatagGTTGGAATTGTCAAAGATATTCGTGAGTCAATGCTTGAAGAAGTAGATTTCAATAAGGAGGCTCAAAACATTGAGTCATTTAAGAGATATCTTGAAACCA
ctctaaa putative branch site (score: 3)
ttatcct putative PPT
tctaaacaatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctcctctgtatttgatttgcagtcgctcttaagatactctctaaacaatattatcctatggatagGTTGGAATTGTCAAAGATATTCGTGAGTCAATGCTTGAAGAAGTAGATTTCAATAAGGAGGCTCAAAACATTGAGTCATTTAAGAGATATCTTGAAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA