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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggttggagcacaagctcttgttactagtgatgagacagtatagtagtaagcaagcaggctaatattctgagttgttgtcggttgtgcagGTTTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATGGATAAGGTTAAGGTTCACGACTTAGAGAAAGTCTGCGAGCCATTGTTCT

Basic information

species Arabidopsis thaliana
transcript AT5G04590.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116451400|gb|EG493992.1|EG493992
EST:     CGTACATGGCTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAG                         GTTTGGCTAGGAGGAACACCTAACCTGACCCAAATAGCGAGAAGTTTCATG
genomic: CGTACATGGCTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAGgtacggttgg ... ggttgtgcagGTTTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATG
EST: gi|125264883|gb|EL278968.1|EL278968
EST:     CCCAACAGCTATCAG                         GTTTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATG
genomic: CCCAACAGCTATCAGgtacggttgg ... ggttgtgcagGTTTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATG
EST: gi|125198318|gb|EL213272.1|EL213272
EST:     CGTACATGGCTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAG                         GTTTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCA
genomic: CGTACATGGCTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAGgtacggttgg ... ggttgtgcagGTTTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCA
EST: gi|125280839|gb|EL294924.1|EL294924
EST:     CGTACATGGCTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAG                         GTTTGGCTAGGAGGAACACCGAACCTGAC
genomic: CGTACATGGCTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAGgtacggttgg ... ggttgtgcagGTTTGGCTAGGAGGAACACCGAACCTGAC
EST: gi|125162596|gb|EL189366.1|EL189366
EST:     CAACAGCTATCAG                         GTTTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATG
genomic: CAACAGCTATCAGgtacggttgg ... ggttgtgcagGTTTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATG
EST: gi|125224402|gb|EL238487.1|EL238487
EST:     CTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAG                         GTTTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATG
genomic: CTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAGgtacggttgg ... ggttgtgcagGTTTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATG
EST: gi|124707177|gb|EH798579.1|EH798579
EST:     AGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAG                         GTTTGGCTAGGGGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATG
genomic: AGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAGgtacggttgg ... ggttgtgcagGTTTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATG
EST: gi|124798852|gb|EH888531.1|EH888531
EST:     CG-ACATGGCTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAG                         GTTTGGCTAGGAGGAAC
genomic: CGTACATGGCTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAGgtacggttgg ... ggttgtgcagGTTTGGCTAGGAGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagtatagtagtaagcaagcaggctaatattctgagttgttgtcggttgtgcagGTTTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATGGATAAGGTTAAGGTTCACGACTTAGAGAAAGTCTGCGAGCCATTGTTCT
                      ggctaat  putative branch site (score: 3)
                         taatattct  TA-rich tract