Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaaccttatatttcttctgtggtaatatctcttcagttttttctatgtgattgcgaagcgacatctctgaaagaatattctcttcgaatgtcttgtgatcgttttttcactgtttggttattgaagcaaactgtcaattgtaatcatgtgtatttttgtggttgcttccttacagATATTAAAATCCATGGGGTTACAGAAAACGTCTGTATCAGCACTAAACCTTCTCATAGATATTGGATATTTTCCTGTACATGTCAATCTTGAACTGCTTA

Basic information

species Arabidopsis thaliana
transcript AT5G02250.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G02250.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA18G25560.1 (Glycine max), 3'ss of exon 6
gtaagtcaaccttatatttcttctgtggtaatatctcttcagttttttctatgtgattgcgaagcgacatctctgaaagaatattctcttcgaatgtcttgtgatcgttttttcactgtttggttattgaagcaaactgtcaattgtaatcatgtgtatttttgtggttgcttccttacagATATTAAAATCCATGGGGTTACAGAAAACGTCTGTATCAGCACTAAACCTTCTCATAGATATTGGATATTTTCCTGTACATGTCAATCTTGAACTGCTTA
                                                                            |    ||||||    |||   ||||   ||   |  |   |  |   | |    ||   ||| ||  |||  ||  |   ||  ||  |  |   || ||  ||| || | |||   ||||| ||    |||||  |    |||||  |||| ||||| ||||||||||||||||||||||||||| |||||||||| ||| | |
----------------------------------------------------------------------------attcctattctaaaagaaaaacttgaagtctcctcctttgtcctctatcaac--agttgactttc--ttgatattcta-ataaattaatcttctgttactagcagGTACTTAAAGAAATGGGTTTGGCAAAAACAGCATCTTCAGCTGTAAAACTTCTGATAGATATTGGATATTTTCCTGTACATATCAATCTTGATCTGTTGA

upper sequence: AT5G02250.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv08s0007g00460.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtcaaccttatatttcttctgtggtaatatctcttcagttttttctatgtgattgcgaagcgacatctctgaaagaatattctcttcgaatgtcttgtgatcgttttttcactgtttggttattgaagcaaactgtcaattgtaatcatgtgtatttttgtggttgcttccttacagATATTAAAATCCATGGGGTTACAGAAAACGTCTGTATCAGCACTAAACCTTCTCATAGATATTGGATATTTTCCTGTACATGTCAATCTTGAACTGCTTA
                                                                          ||||  |  || |  | ||  ||    ||||| || | |   |||     |  | || ||   ||| | ||   ||    | ||| |||       |||| |  |||||  | |   | |||||  |    |||||  |    |||||| |||| || ||||||||| |||| ||||||||||||||||||||||| || ||| | |
--------------------------------------------------------------------------gaaatgaccttatgat-gatagttgcatgatccttgtgtgtgtgtccaactgcttaatcagtttgttactttctatataatatatatttt------cttcttatcagATTCTTAGGGCAATGGGACTGGTCAAAACAGCATCTTCAGCATTAAATCTCCTCATAGATGTTGGGTATTTTCCTGTACATGTCAATCTCGATCTGTTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124821188|gb|EH906054.1|EH906054
EST:     ATGCCATTGATGCATGGGCAAGCACTGACCAGCAGAAATTGGCTGGAACG                         ATATTAAAATCCATGGG-TTACAGAAAACGT
genomic: ATGCCATTGATGCATGGGCAAGCACTGACCAGCAGAAATTGGCTGGAACGgtaagtcaac ... ttccttacagATATTAAAATCCATGGGGTTACAGAAAACGT
EST: gi|125292343|gb|EL306428.1|EL306428
EST:     ATGCCATTGATGCATGGGCAAGCACTGACCAGCAGAAATTGGCTGGAACG                         ATATTAAAATCCATGGGGTTACAGAAAACGT
genomic: ATGCCATTGATGCATGGGCAAGCACTGACCAGCAGAAATTGGCTGGAACGgtaagtcaac ... ttccttacagATATTAAAATCCATGGGGTTACAGAAAACGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaagcaaactgtcaattgtaatcatgtgtatttttgtggttgcttccttacagATATTAAAATCCATGGGGTTACAGAAAACGTCTGTATCAGCACTAAACCTTCTCATAGATATTGGATATTTTCCTGTACATGTCAATCTTGAACTGCTTA
                                         ttgcttcctt  CT-rich tract
               aattgtaat  TA-rich tract