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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttactacatggaaatcaaatcccaaatcattctttcttcttgtaatccgctctaaacagttttcctttttctctgttttagGACATCGGGAAATCGATTCTGGAAAGCTATTCAAGAGTTCTAGAGAGCTTAGCATTCAACATTGTTGCACGCATCGATGATTTGCTCTTTGTTGATGATC

Basic information

species Arabidopsis thaliana
transcript AT5G02010.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G02010.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv08s0007g01380.t01 (Vitis vinifera), 3'ss of exon 6
------gttactacatggaaatcaaatcccaaatcattc--tttcttcttgtaatccgctctaaacagttttcctttttctctgttttagGACATCGGGAAATCGATTCTGGAAAGCTATTCAAGAGTTCTAGAGAGCTTAGCATTCAACATTGTTGCACGCATCGATGATTTGCTCTTTGTTGATGATC
       |||   ||  ||       |     || |||   |||| | || ||       || ||    ||   |||  |  |  |||||||  |||||||||| ||| | |||||||| || |||||| |||||||||||||||  || ||||| || || || || ||| |||||| ||| |||||  
gttcactttaagccactgagtatttttgttctattattgcatttcattttctatctaatactcaattaattaaatttaacatttatttagGATGTCGGGAAATCCATTTTAGAAAGCTACTCCAGAGTTTTAGAGAGCTTAGCATCTAATATTGTCGCTCGAATTGACGATGTGCTCTATGTGGATGACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125312523|gb|EL326608.1|EL326608
EST:     CAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAATCCAATACAACAAG                         GACATCGGGAAATCGATTCTGGAAAGCTATTCAAGAGTTCTA
genomic: CAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAATCCAATACAACAAGgttactacat ... tctgttttagGACATCGGGAAATCGATTCTGGAAAGCTATTCAAGAGTTCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattctttcttcttgtaatccgctctaaacagttttcctttttctctgttttagGACATCGGGAAATCGATTCTGGAAAGCTATTCAAGAGTTCTAGAGAGCTTAGCATTCAACATTGTTGCACGCATCGATGATTTGCTCTTTGTTGATGATC
                       ctctaaa  putative branch site (score: 3)
                              cagttttcctttttct  CT-rich tract
             ttgtaat  TA-rich tract