Sequence
atgc intronic sequence ATGC exonic sequencegtaagtaccaaacaaacttatataatcagatcatttactctgtttttacttacaaccgtgtctgtttggtttcagTCATTGGAGACGTGAGAGGAAGAGGGTTAATGGTTGGGATTGAGCTTGTGAGTGACCGGAAAGACAAGACACCAGCCAAGGCTGAAACATCTGTCTTGTT
Basic information
species | Arabidopsis thaliana |
transcript | AT4G39660.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G39660.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA11G36000.3 (Glycine max), 3'ss of exon 6
---------------------------------------------------------------------------------------------gtaagtaccaaacaaacttatataatcagatcatttactctgtttttacttacaaccgtg------tctgtttggtttcagTCATTGGAGACGTGAGAGGAAGAGGGTTAATGGTTGGGATTGAGCTTGTGAGTGACCGGAAAGACAAGACACCAGCCAAGGCTGAAACATCTGTCTTGTT
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gtacggttatcttgaatcttatataccaaaaagattcatgcttttgtgttgtgatatatttttattttttgatacatttgccttttcttatgtatctatatgaagcttcattacatagaacatacatatgccataattttgttgattattttgataatttttatatatgtccagTCATTGGAGATGTAAGAGGAAGAGGCTTAATGGTGGGGATAGAATTTGTCACCGATAGAAAAGAGAAGACACCTGCAAAGGCTGAAACAACAGCATTGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125237984|gb|EL252069.1|EL252069EST: AAAGATGTGCAGAAAAGACATGATA TCATTGGAGACGTGAGAGGAAGAGGGTTAATGGTTGGGATTGAGCTTGTGA
genomic: AAAGATGTGCAGAAAAGACATGATAgtaagtacca ... ttggtttcagTCATTGGAGACGTGAGAGGAAGAGGGTTAATGGTTGGGATTGAGCTTGTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tataatcagatcatttactctgtttttacttacaaccgtgtctgtttggtttcagTCATTGGAGACGTGAGAGGAAGAGGGTTAATGGTTGGGATTGAGCTTGTGAGTGACCGGAAAGACAAGACACCAGCCAAGGCTGAAACATCTGTCTTGTT
tacttac putative branch site (score: 1)
tctgttt putative PPT
tttttactta TA-rich tract