1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctgttaatttgcttctttattagcctctgctattactctcgcatatgccttgtattgagagtgaaaaggaacaatttgttacctttatttcaaattgcagACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAGAG
species | Arabidopsis thaliana |
transcript | AT4G39460.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG ACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAEST: gi|86037535|gb|DR333290.1|DR333290
genomic: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGgtgagagggt ... caaattgcagACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACA
EST: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG ACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAEST: gi|152038462|gb|AV823633.2|AV823633
genomic: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGgtgagagggt ... caaattgcagACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACA
EST: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG ACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAEST: gi|86037538|gb|DR333293.1|DR333293
genomic: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGgtgagagggt ... caaattgcagACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACA
EST: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG ACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAEST: gi|86037548|gb|DR333303.1|DR333303
genomic: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGgtgagagggt ... caaattgcagACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACA
EST: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG ACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAEST: gi|125206195|gb|EL221149.1|EL221149
genomic: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGgtgagagggt ... caaattgcagACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACA
EST: GCGCAGTTGCTCACCTG ACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAEST: gi|86037553|gb|DR333308.1|DR333308
genomic: GCGCAGTTGCTCACCTGgtgagagggt ... caaattgcagACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACA
EST: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG ACTGCAGGGGCCATCGGTGGAACTTGCTGCATCTCTGATTCGAGTEST: gi|86037534|gb|DR333289.1|DR333289
genomic: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGgtgagagggt ... caaattgcagACTGCAGGGGCCATCGGTGGA-CTTGCTGCATCTCTGATTCGAGT
EST: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG ACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAEST: gi|86037555|gb|DR333310.1|DR333310
genomic: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGgtgagagggt ... caaattgcagACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACA
EST: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG ACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAEST: gi|86037540|gb|DR333295.1|DR333295
genomic: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGgtgagagggt ... caaattgcagACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACA
EST: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG ACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAEST: gi|86037544|gb|DR333299.1|DR333299
genomic: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGgtgagagggt ... caaattgcagACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACA
EST: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTG ACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCT
genomic: AGAAACTGCTGAAGACCTTTCCTGATCATTTAAGCGCAGTTGCTCACCTGgtgagagggt ... caaattgcagACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCT
tgccttgtattgagagtgaaaaggaacaatttgttacctttatttcaaattgcagACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAGAG
cctttatttc CT-rich tract
tttatttcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttaatttgcttctttattagcctctgctattactctcgcatatgccttgtattgagagtgaaaaggaacaatttgttacctttatttcaaattgcagACTGCAGGGGCCATCGGTGGACTTGCTGCATCTCTGATTCGAGTGCCTACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - ttgcttc
- - - - - - - - - - - -cctctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaacaa