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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctatcattatctaattgtgtgcctgataattctggtcagatctgttctcttggatttgatatcatttctctattttctatgttagGACTACAACTCGAAGCAGCACCGAGGAATAGGGTTTATCACATTCTCTAGTGCTG

Basic information

species Arabidopsis thaliana
transcript AT4G36960.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830094|gb|CK119778.1|CK119778
EST:     CCATTTTGAGAGGTATGGGGAAATAACAGACTTATACATGCCTAAG                         GACTACAACTCGAAGCAGCACCGAGGAATAGGGTTTATCACATTCTCTAGT
genomic: CCATTTTGAGAGGTATGGGGAAATAACAGACTTATACATGCCTAAGgtactctatc ... tctatgttagGACTACAACTCGAAGCAGCACCGAGGAATAGGGTTTATCACATTCTCTAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctggtcagatctgttctcttggatttgatatcatttctctattttctatgttagGACTACAACTCGAAGCAGCACCGAGGAATAGGGTTTATCACATTCTCTAGTGCTG
                       atttgat  putative branch site (score: 5)
                               tcatttctctattttc  CT-rich tract
                       atttgatatcattt  TA-rich tract