1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtataatttctctcattttatattcactcgaaaacttcatttttagtttgttattttaactttgagtttttgtttcttgaatcttataaaatagGTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAG
species | Arabidopsis thaliana |
transcript | AT4G36920.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATAAGTGTGGTCGTTGGGAAGCTCGAATGGGTCAATTCTTAGGCAAAAA GTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAGEST: gi|164106701|gb|ES159057.1|ES159057
genomic: CATAAGTGTGGTCGTTGGGAAGCTCGAATGGGTCAATTCTTAGGCAAAAAgtataatttc ... tataaaatagGTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAG
EST: CATAAGTGTGGTCGTTGGGAAGCTCGAATGGGTCAATTCTTAGGCAAAAA GTATGTTTATTTGGGTTTGTTCGACEST: gi|124829463|gb|EH914054.1|EH914054
genomic: CATAAGTGTGGTCGTTGGGAAGCTCGAATGGGTCAATTCTTAGGCAAAAAgtataatttc ... tataaaatagGTATGTTTATTTGGGTTTGTTCGAC
EST: CATAAGTGTGGTCGTTGGGAAGCTCGAATGGGTCAATTCTTAGGCAAAAA GTATGTTTATTTGGGTTTGEST: gi|124756057|gb|EH846187.1|EH846187
genomic: CATAAGTGTGGTCGTTGGGAAGCTCGAATGGGTCAATTCTTAGGCAAAAAgtataatttc ... tataaaatagGTATGTTTATTTGGGTTTG
EST: GGGTCAATTCTTAGGCAAAAA GTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAG
genomic: GGGTCAATTCTTAGGCAAAAAgtataatttc ... tataaaatagGTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAG
tttttagtttgttattttaactttgagtttttgtttcttgaatcttataaaatagGTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAG
ttttaac putative branch site (score: 2)
tttttgtttcttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatttctctcattttatattcactcgaaaacttcatttttagtttgttattttaactttgagtttttgtttcttgaatcttataaaatagGTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT