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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgtctttttgtttgattctacaacacacattgttgtataatgtgtttttctcgttactaattgattttcattattttatatataatcacagAGCTTACGATAAAGCTGCAATCAAATGTAACGGCAAAGACGCCGTGACCAACTTTGATCCGAGTATTTACGATGAGGAACTCAATGCCG

Basic information

species Arabidopsis thaliana
transcript AT4G36920.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36920.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv07s0031g00220.t01 (Vitis vinifera), 3'ss of exon 6
------------------------------gtaaatgtctttttgtttgattctacaacacacattgttgtataatgtgttttt-ctcgttactaattgattttcattattttatatataatcacagAGCTTACGATAAAGCTGCAATCAAATGTAACGGCAAAGACGCCGTGACCAACTTTGATCCGAGTATTTACGATGAGGAACTCAATGCCG---
                              |     || | ||    |  ||| |   |||| || | |    |||   |      ||  |   | |||| |    |    |||   ||  |   || || || || ||||||||||| |||||||| |||||||| || || |||||||| ||||| |||||||| ||  | || |||||  |     
gttagtgttgattgctattttcatttttctgcctgggtttattacagtatttccaatgcacatatcggtaaggaatagataagagttcagtgggatttgaatgatgtagcgtta---atttttgtagGGCCTATGACAAAGCTGCAATTAAATGTAATGGCAAAGAGGCTGTCACCAACTTCGATCCCAGTATTTATGAAAATGAGCTCAACTCATCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124915406|gb|EH989280.1|EH989280
EST:     GTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAG                         AGCTTACGATAAAG
genomic: GTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAGgtaaatgtct ... ataatcacagAGCTTACGATAAAG
EST: gi|124756057|gb|EH846187.1|EH846187
EST:     GTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAG                         AGCT-ACGATAAAG
genomic: GTATGTTTATTTGGGTTTGTTCGACACCGAGGTCGAAGCTGCTAGgtaaatgtct ... ataatcacagAGCTTACGATAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatgtgtttttctcgttactaattgattttcattattttatatataatcacagAGCTTACGATAAAGCTGCAATCAAATGTAACGGCAAAGACGCCGTGACCAACTTTGATCCGAGTATTTACGATGAGGAACTCAATGCCG
                 ttactaattgattttc  TA-rich tract