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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgtcgttcgagaactttagtatcttaataaggaaataggatttaacatctggagcttctccttgcgttggctttactcattcacgtttgtactgattctcaagaagtgaactatagttgcttctataatagtctgatttcttactattccagGTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAA

Basic information

species Arabidopsis thaliana
transcript AT4G36210.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36210.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA16G24310.1 (Glycine max), 3'ss of exon 7
gtatatgtcgttcgagaactttagtatcttaataaggaaataggatttaacatctggagcttctcc-ttgcgttggctttactcattcacgtttgtactgattctcaagaagtgaactatagttgcttctataatagtctgatttcttactattccagGTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAA
                                                   |||| ||  ||     | | | ||   ||| ||||     ||     ||||  ||      | ||  ||     |||  ||       || | |      |    |||||  | ||||| ||||||||||||||||| ||    |||||||| || ||||| ||||||||||||||||
-------------------------------------------------ttatcttgactttagaaatcgtgatgttattattcatatg-attgacggtgatgatccctgcctaaaaaatgac--ctttcat------ttggtcttgccaaaacttagGTATGCACTGCAGTGGGAGTCCAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA

upper sequence: AT4G36210.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA02G05680.1 (Glycine max), 3'ss of exon 7
gtatatgtcgttcgagaactttagtatcttaataaggaaataggatttaacatctggagcttctccttgcgttggctttactcattcacgtttgtactgattctcaagaagtgaactatagttgcttctataatagtctgatttcttactattccagGTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAA
                                            || | |  | |  | | | |  |    ||   |||| | ||| | |   ||  |||| |     ||   ||  |      |||  | | | ||||   | |  |   ||  |||||  ||||||| ||||||||| ||||||| ||    |||||||| || ||||| ||||||||||||||||
------------------------------------------ttatcttaactttaaaacctgtgatgttattattttta-tgattgatg---gtgatgatccctgccaaaaaaatgac-----ctttcaca-tggtct---tgccaaaagtt--agGTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaagaagtgaactatagttgcttctataatagtctgatttcttactattccagGTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAA
                                        ttcttac  putative branch site (score: 2)
                                       tttcttactattcc  CT-rich tract
                       ttctataata  TA-rich tract