1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaagagcaatgagatggaactggcgattacttgcatactaaagattttgcttatgaatatggattgaactgagtttaaccctgttgagccctatcaacagTTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTGTTAATGCGGTTGACAAAAACAAGAACACACCTCTGCATTATGCTGCTGGTTACGGGAGGA
species | Arabidopsis thaliana |
transcript | AT4G35450.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: MAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAG TTGAAATGTGCTCAAGTTCTTAYCGATGCTGGAGCAAGTGTTAATGCGGTTEST: gi|86079360|gb|DR375117.1|DR375117
genomic: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAGgtatgcaatt ... ctatcaacagTTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTGTTAATGCGGTT
EST: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAG TTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTGTTAATGCGGTTEST: gi|125258107|gb|EL272192.1|EL272192
genomic: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAGgtatgcaatt ... ctatcaacagTTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTGTTAATGCGGTT
EST: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAG TTGAAATGTGCTCAAGTTCTTATCGATGEST: gi|125298353|gb|EL312438.1|EL312438
genomic: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAGgtatgcaatt ... ctatcaacagTTGAAATGTGCTCAAGTTCTTATCGATG
EST: GGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAG TTGAAATGTGCTCAAGTTCTTAATCGATGCTGGAGCAAGTGTTAATGCGGTEST: gi|124940978|gb|EL017377.1|EL017377
genomic: GGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAGgtatgcaatt ... ctatcaacagTTGAAATGTGCTCAAGTTCTTA-TCGATGCTGGAGCAAGTGTTAATGCGGT
EST: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAG TTGAAATGTGCTCAAGTTCTTATCGATGEST: gi|86079639|gb|DR375396.1|DR375396
genomic: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAGgtatgcaatt ... ctatcaacagTTGAAATGTGCTCAAGTTCTTATCGATG
EST: AAGATTCTG-AGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAG TTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTGTTAATGCGGTTEST: gi|124978422|gb|EL051602.1|EL051602
genomic: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAGgtatgcaatt ... ctatcaacagTTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTGTTAATGCGGTT
EST: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAG TTGAAATGTGCTCTAGTTCTTATCGATGCTGGAGCAAGTGEST: gi|164063866|gb|ES004333.1|ES004333
genomic: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAGgtatgcaatt ... ctatcaacagTTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTG
EST: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAG TTGAAATGTGCTCAAGTTCTTATCGATGCEST: gi|86081367|gb|DR377124.1|DR377124
genomic: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAGgtatgcaatt ... ctatcaacagTTGAAATGTGCTCAAGTTCTTATCGATGC
EST: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAG TTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTGTTAATGCGGTTEST: gi|125075887|gb|EL139259.1|EL139259
genomic: AAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAGgtatgcaatt ... ctatcaacagTTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTGTTAATGCGGTT
EST: CATTTTGCTTGTTGGATACGGCGAG TTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTGTTAATGCGGTT
genomic: CATTTTGCTTG-TGGATACGGCGAGgtatgcaatt ... ctatcaacagTTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTGTTAATGCGGTT
tttgcttatgaatatggattgaactgagtttaaccctgttgagccctatcaacagTTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTGTTAATGCGGTTGACAAAAACAAGAACACACCTCTGCATTATGCTGCTGGTTACGGGAGGA
gtttaac putative branch site (score: 3)
ccctatc putative PPT
ttatgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagagcaatgagatggaactggcgattacttgcatactaaagattttgcttatgaatatggattgaactgagtttaaccctgttgagccctatcaacagTTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTGTTAATGCGGTTGACAAAAACAAGAACACACCTCTGCATTATGCTGCTGGTTACGGGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
-aagagca
- - - - - - - - - - - - - - - - - - actaaag