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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttttttcttagctcaactcttaatcgcctgattatcgggggttttctgttttggggaactcttctgatattttgatgactgagtctcgtacagATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCTATCTCTACCGCTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G35020.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86021225|gb|DR316971.1|DR316971
EST:     GAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTG                         ATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTS-TGTGCCTA
genomic: GAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTGgttggttttt ... tctcgtacagATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCTA
EST: gi|86021224|gb|DR316970.1|DR316970
EST:     GAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTG                         ATCTTCGAGATGATAAGCAATTCTTTTGCCGAGCACCCTGG-GTSTGTGCC
genomic: GAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTGgttggttttt ... tctcgtacagATCTTCGAGATGATAAGCAATTCTTT-GCCGAGCACCCTGGTGC-TGTGCC
EST: gi|86021223|gb|DR316969.1|DR316969
EST:     GAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTG                         ATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGSTGTGCCTA
genomic: GAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTGgttggttttt ... tctcgtacagATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggttttctgttttggggaactcttctgatattttgatgactgagtctcgtacagATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCTATCTCTACCGCTCAG
                            atattttgat  TA-rich tract