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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactagttactcgctctctgaataaattgttttactacatgtcctcctgccagagtgaaatctctcttacccaattctaatgtctggttctccagGTAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGTCCAATG

Basic information

species Arabidopsis thaliana
transcript AT4G32272.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32272.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA06G07120.1 (Glycine max), 3'ss of exon 3
---gtacactagttactcgctctctgaataaattgt---tttactacatgtcctcctgccagagtgaaatctct--cttacccaattctaatgtctggttctccagGTAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGTCCAATG
   |||  |  |||      | ||   | | | ||    ||   ||| | |  ||||   |||||  | | |||  ||||        || |||||  || | |||| ||| | |||||| | |||||||||||||||||||||| |||||
gtcgtattcctgttctctcttatccacacacagtggaaattctataccttttttccttgtagagttcagtttcttacttatttggcatta-tgtct--tttttcagGCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGCAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcctcctgccagagtgaaatctctcttacccaattctaatgtctggttctccagGTAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGTCCAATG
                                  ttctaat  putative branch site (score: 2)
                                               ttctcc  putative PPT
                                aattctaat  TA-rich tract